miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7322 3' -55.5 NC_001900.1 + 21191 0.66 0.67761
Target:  5'- -cGAGGGgaucUCGGCCcuggugaacaUCGGUGGCGAUCu -3'
miRNA:   3'- gaCUUCC----AGUCGG----------AGCCGUUGCUGGu -5'
7322 3' -55.5 NC_001900.1 + 38093 0.66 0.673189
Target:  5'- cCUGGAcguacGUCuuGGCCUCGGCGuugcgcgucagguCGACCAc -3'
miRNA:   3'- -GACUUc----CAG--UCGGAGCCGUu------------GCUGGU- -5'
7322 3' -55.5 NC_001900.1 + 38137 0.66 0.655452
Target:  5'- aCUGAAGG-CGuCCUCGGUuccggucaucguGAcCGACCAu -3'
miRNA:   3'- -GACUUCCaGUcGGAGCCG------------UU-GCUGGU- -5'
7322 3' -55.5 NC_001900.1 + 4005 0.66 0.655452
Target:  5'- -cGguGGUCgAGCCa-GGCAAgGACCGc -3'
miRNA:   3'- gaCuuCCAG-UCGGagCCGUUgCUGGU- -5'
7322 3' -55.5 NC_001900.1 + 33376 0.67 0.622077
Target:  5'- gUGGAGGUgCGGCCU--GCGcCGGCCGa -3'
miRNA:   3'- gACUUCCA-GUCGGAgcCGUuGCUGGU- -5'
7322 3' -55.5 NC_001900.1 + 6837 0.67 0.622077
Target:  5'- uCUGcAGGaUCAG-CUCGGCGAcacccuucuCGACCGa -3'
miRNA:   3'- -GACuUCC-AGUCgGAGCCGUU---------GCUGGU- -5'
7322 3' -55.5 NC_001900.1 + 16977 0.67 0.599854
Target:  5'- gCUGGAgccgguguGGUC-GCaCUCGGCAugGACg- -3'
miRNA:   3'- -GACUU--------CCAGuCG-GAGCCGUugCUGgu -5'
7322 3' -55.5 NC_001900.1 + 13003 0.67 0.599854
Target:  5'- uCUGAccaacguGGUCAGCggCGGCGGCGAg-- -3'
miRNA:   3'- -GACUu------CCAGUCGgaGCCGUUGCUggu -5'
7322 3' -55.5 NC_001900.1 + 8043 0.67 0.577744
Target:  5'- -aGGAGGUUgcuGCCUCGau-GCGGCCAc -3'
miRNA:   3'- gaCUUCCAGu--CGGAGCcguUGCUGGU- -5'
7322 3' -55.5 NC_001900.1 + 16787 0.67 0.577744
Target:  5'- -aGAAGGgacugagCAGUCUUGGUGAUGACg- -3'
miRNA:   3'- gaCUUCCa------GUCGGAGCCGUUGCUGgu -5'
7322 3' -55.5 NC_001900.1 + 25535 0.67 0.566754
Target:  5'- gCUGgcGGcUCAgGCCgguGCGACGACCAa -3'
miRNA:   3'- -GACuuCC-AGU-CGGagcCGUUGCUGGU- -5'
7322 3' -55.5 NC_001900.1 + 21474 0.67 0.566754
Target:  5'- aUGAAGGcguUCAcccUCUCGGCGuucGCGGCCAu -3'
miRNA:   3'- gACUUCC---AGUc--GGAGCCGU---UGCUGGU- -5'
7322 3' -55.5 NC_001900.1 + 6315 0.67 0.566754
Target:  5'- cCUGGucGGcgCAGCCgcacCGGCcACGGCCGc -3'
miRNA:   3'- -GACUu-CCa-GUCGGa---GCCGuUGCUGGU- -5'
7322 3' -55.5 NC_001900.1 + 16721 0.68 0.512768
Target:  5'- uUGAA-GUCGGCCUUGGCcugGGCCGc -3'
miRNA:   3'- gACUUcCAGUCGGAGCCGuugCUGGU- -5'
7322 3' -55.5 NC_001900.1 + 24637 0.69 0.502215
Target:  5'- --cAAGG-CGGCUUCGGCGguuccugggugACGGCCAc -3'
miRNA:   3'- gacUUCCaGUCGGAGCCGU-----------UGCUGGU- -5'
7322 3' -55.5 NC_001900.1 + 1601 0.69 0.502215
Target:  5'- gCUGuucGAGGUCGGCuuCUCGGCcgguGGCGACa- -3'
miRNA:   3'- -GAC---UUCCAGUCG--GAGCCG----UUGCUGgu -5'
7322 3' -55.5 NC_001900.1 + 28674 0.69 0.491757
Target:  5'- -gGAAGGUgAuGCCcuccUCGGCGAUGuACCAg -3'
miRNA:   3'- gaCUUCCAgU-CGG----AGCCGUUGC-UGGU- -5'
7322 3' -55.5 NC_001900.1 + 23314 0.69 0.491757
Target:  5'- -cGgcGGUCGGCCcCGGCug-GGCCGa -3'
miRNA:   3'- gaCuuCCAGUCGGaGCCGuugCUGGU- -5'
7322 3' -55.5 NC_001900.1 + 9597 0.69 0.469116
Target:  5'- uCUGggGGUCAGgg-CGGCugaucgugauguACGACCGg -3'
miRNA:   3'- -GACuuCCAGUCggaGCCGu-----------UGCUGGU- -5'
7322 3' -55.5 NC_001900.1 + 45018 0.69 0.461015
Target:  5'- ----uGGUCGGCCuucagaaucuccUCGGCGACaGGCCGa -3'
miRNA:   3'- gacuuCCAGUCGG------------AGCCGUUG-CUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.