miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7322 5' -57.8 NC_001900.1 + 46669 0.66 0.598989
Target:  5'- cGCGUaCGACgaCGG-GCUGACcuUCCGu -3'
miRNA:   3'- uCGCAaGCUGg-GCCaCGACUG--AGGCc -5'
7322 5' -57.8 NC_001900.1 + 41220 0.66 0.598989
Target:  5'- aGGCGaUCGACCCGGaGa--GC-CCGGa -3'
miRNA:   3'- -UCGCaAGCUGGGCCaCgacUGaGGCC- -5'
7322 5' -57.8 NC_001900.1 + 23814 0.66 0.588262
Target:  5'- gGGCuccggUCGGCUauCGGcGCUGGCUuCCGGc -3'
miRNA:   3'- -UCGca---AGCUGG--GCCaCGACUGA-GGCC- -5'
7322 5' -57.8 NC_001900.1 + 44140 0.66 0.57757
Target:  5'- -aUGUUCGACCCGuUGCcGGaaCCGGa -3'
miRNA:   3'- ucGCAAGCUGGGCcACGaCUgaGGCC- -5'
7322 5' -57.8 NC_001900.1 + 22779 0.68 0.473178
Target:  5'- cGCGUUCGACaccgcuaCCGGUGCUGucgaUgCGa -3'
miRNA:   3'- uCGCAAGCUG-------GGCCACGACug--AgGCc -5'
7322 5' -57.8 NC_001900.1 + 31709 0.68 0.464313
Target:  5'- aAGCGUUCGuCaaaGGcaGCuUGGCUCCGGu -3'
miRNA:   3'- -UCGCAAGCuGgg-CCa-CG-ACUGAGGCC- -5'
7322 5' -57.8 NC_001900.1 + 21621 0.68 0.454565
Target:  5'- cGCG-UCGGCacauCGGUGCUcGGCUacCCGGu -3'
miRNA:   3'- uCGCaAGCUGg---GCCACGA-CUGA--GGCC- -5'
7322 5' -57.8 NC_001900.1 + 33400 0.68 0.444929
Target:  5'- gAGCGgugUCGACCgGcGcGCUGGCgaaCGGg -3'
miRNA:   3'- -UCGCa--AGCUGGgC-CaCGACUGag-GCC- -5'
7322 5' -57.8 NC_001900.1 + 17878 0.69 0.426007
Target:  5'- aAGCGUUCGGCCagaucguaGGUGCggucauucaguUGGCcCCGa -3'
miRNA:   3'- -UCGCAAGCUGGg-------CCACG-----------ACUGaGGCc -5'
7322 5' -57.8 NC_001900.1 + 43918 0.77 0.130613
Target:  5'- aGGUGUagcUCGuCCCGGUGCUGAgaucgagcgucUUCCGGu -3'
miRNA:   3'- -UCGCA---AGCuGGGCCACGACU-----------GAGGCC- -5'
7322 5' -57.8 NC_001900.1 + 24494 1.1 0.000533
Target:  5'- cAGCGUUCGACCCGGUGCUGACUCCGGu -3'
miRNA:   3'- -UCGCAAGCUGGGCCACGACUGAGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.