miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7323 5' -58.9 NC_001900.1 + 3529 0.66 0.514581
Target:  5'- aGGACgCcauCGAC-GCGGCGCUcgGGGCc- -3'
miRNA:   3'- -CCUG-Gau-GCUGcCGCCGCGA--UCCGuc -5'
7323 5' -58.9 NC_001900.1 + 18657 0.66 0.494186
Target:  5'- aGGACaaggcCGGcCGuGCGGCGCUgcAGGCGc -3'
miRNA:   3'- -CCUGgau--GCU-GC-CGCCGCGA--UCCGUc -5'
7323 5' -58.9 NC_001900.1 + 40838 0.66 0.474168
Target:  5'- uGGCCUGguggUGguucACGGCGGCGCUcgcGGCGc -3'
miRNA:   3'- cCUGGAU----GC----UGCCGCCGCGAu--CCGUc -5'
7323 5' -58.9 NC_001900.1 + 35260 0.67 0.464312
Target:  5'- -cGCCUcauggAgGGCGGUGGCGUcgGGGCGa -3'
miRNA:   3'- ccUGGA-----UgCUGCCGCCGCGa-UCCGUc -5'
7323 5' -58.9 NC_001900.1 + 39138 0.67 0.464312
Target:  5'- uGACCUG-GACGGCcgGGgGCUuacgcAGGUAGu -3'
miRNA:   3'- cCUGGAUgCUGCCG--CCgCGA-----UCCGUC- -5'
7323 5' -58.9 NC_001900.1 + 38524 0.67 0.444929
Target:  5'- gGGAUCc-CGACGGuCGGCGUUccagGGGCu- -3'
miRNA:   3'- -CCUGGauGCUGCC-GCCGCGA----UCCGuc -5'
7323 5' -58.9 NC_001900.1 + 10491 0.67 0.416727
Target:  5'- aGGCC-GCGAUGGgccuCGGCcuGCUGGGCAc -3'
miRNA:   3'- cCUGGaUGCUGCC----GCCG--CGAUCCGUc -5'
7323 5' -58.9 NC_001900.1 + 23331 0.68 0.405756
Target:  5'- uGGGCCgaguucuauacCGGCGGCGGCuacggaucGGGCAGa -3'
miRNA:   3'- -CCUGGau---------GCUGCCGCCGcga-----UCCGUC- -5'
7323 5' -58.9 NC_001900.1 + 29825 0.68 0.398544
Target:  5'- cGGGUCUACGGCGGUGGgGCcaacacGGUGGc -3'
miRNA:   3'- -CCUGGAUGCUGCCGCCgCGau----CCGUC- -5'
7323 5' -58.9 NC_001900.1 + 6820 0.68 0.380877
Target:  5'- cGGACUUcGCGAUGGCGG-GUUAcucGCAGg -3'
miRNA:   3'- -CCUGGA-UGCUGCCGCCgCGAUc--CGUC- -5'
7323 5' -58.9 NC_001900.1 + 13005 0.68 0.36374
Target:  5'- uGACCaacguggucaGCGGCGGCGGCGa-GGGCuGa -3'
miRNA:   3'- cCUGGa---------UGCUGCCGCCGCgaUCCGuC- -5'
7323 5' -58.9 NC_001900.1 + 1163 0.69 0.354546
Target:  5'- uGGACUUGgaGGCGGCGGUggagccgccggaaGCggccgGGGCGGu -3'
miRNA:   3'- -CCUGGAUg-CUGCCGCCG-------------CGa----UCCGUC- -5'
7323 5' -58.9 NC_001900.1 + 5602 0.69 0.331099
Target:  5'- uGGAgCUGuCGGa-GCuGCGCUGGGCAGg -3'
miRNA:   3'- -CCUgGAU-GCUgcCGcCGCGAUCCGUC- -5'
7323 5' -58.9 NC_001900.1 + 37338 0.69 0.315606
Target:  5'- cGGGCCgugUACGACGGCccugucGGCGUccacgaAGGCAa -3'
miRNA:   3'- -CCUGG---AUGCUGCCG------CCGCGa-----UCCGUc -5'
7323 5' -58.9 NC_001900.1 + 28113 0.7 0.272438
Target:  5'- cGGCCUGUGACGGUGGCgGCUccGCAc -3'
miRNA:   3'- cCUGGAUGCUGCCGCCG-CGAucCGUc -5'
7323 5' -58.9 NC_001900.1 + 48816 0.74 0.158318
Target:  5'- uGGACCUGCGACGaCGGUGCUuauuucgcuuauuucGGUGGg -3'
miRNA:   3'- -CCUGGAUGCUGCcGCCGCGAu--------------CCGUC- -5'
7323 5' -58.9 NC_001900.1 + 24916 1.1 0.000364
Target:  5'- cGGACCUACGACGGCGGCGCUAGGCAGc -3'
miRNA:   3'- -CCUGGAUGCUGCCGCCGCGAUCCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.