miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7324 3' -57.2 NC_001900.1 + 39881 0.66 0.619473
Target:  5'- aCGAGGCcGGCCUGagcaCGGCcaaGAUCa -3'
miRNA:   3'- -GCUCCGcUCGGACg---GCUGcuaCUAGc -5'
7324 3' -57.2 NC_001900.1 + 28329 0.66 0.59777
Target:  5'- uGAGcCGAGCCacagcuugcUGCCGuCGGucUGGUCGa -3'
miRNA:   3'- gCUCcGCUCGG---------ACGGCuGCU--ACUAGC- -5'
7324 3' -57.2 NC_001900.1 + 33374 0.67 0.554771
Target:  5'- gGAGGUGcGGCCUgcgccgGCCGACGcGUuGUCGa -3'
miRNA:   3'- gCUCCGC-UCGGA------CGGCUGC-UAcUAGC- -5'
7324 3' -57.2 NC_001900.1 + 33581 0.67 0.533602
Target:  5'- aCGAGGCuGcugcgaucaaAGCCgucGCUGACGGUG-UCGa -3'
miRNA:   3'- -GCUCCG-C----------UCGGa--CGGCUGCUACuAGC- -5'
7324 3' -57.2 NC_001900.1 + 36971 0.67 0.533602
Target:  5'- uGGGGCuuGAuGCCuUGCCGGugggugugacCGAUGAUCa -3'
miRNA:   3'- gCUCCG--CU-CGG-ACGGCU----------GCUACUAGc -5'
7324 3' -57.2 NC_001900.1 + 4139 0.67 0.523124
Target:  5'- cCGAccGGCGaAGCg-GCCGGCGGUGAccccaaacaacUCGg -3'
miRNA:   3'- -GCU--CCGC-UCGgaCGGCUGCUACU-----------AGC- -5'
7324 3' -57.2 NC_001900.1 + 16493 0.67 0.512727
Target:  5'- gGAGGCGAauGCCgaauagUGCUGGCGuagaGGUCGc -3'
miRNA:   3'- gCUCCGCU--CGG------ACGGCUGCua--CUAGC- -5'
7324 3' -57.2 NC_001900.1 + 2964 0.68 0.502415
Target:  5'- gCGAGGCGAGCgaaCUGCCaGuCGGUcGGUUc -3'
miRNA:   3'- -GCUCCGCUCG---GACGG-CuGCUA-CUAGc -5'
7324 3' -57.2 NC_001900.1 + 16601 0.68 0.502415
Target:  5'- uCGAGcGgGAGCUgucgGCCGACGuuccGGUCa -3'
miRNA:   3'- -GCUC-CgCUCGGa---CGGCUGCua--CUAGc -5'
7324 3' -57.2 NC_001900.1 + 40011 0.68 0.452333
Target:  5'- uCGcAGGUGcauGGCCUcguagccgucGCCGACGAUG-UCGg -3'
miRNA:   3'- -GC-UCCGC---UCGGA----------CGGCUGCUACuAGC- -5'
7324 3' -57.2 NC_001900.1 + 7879 0.69 0.423622
Target:  5'- gCGGGGCGcGGCUUGCCGAuCGccUGAcCGg -3'
miRNA:   3'- -GCUCCGC-UCGGACGGCU-GCu-ACUaGC- -5'
7324 3' -57.2 NC_001900.1 + 10258 0.69 0.423622
Target:  5'- aGAGGCGAugcGCCUGgccuaCCGGCuGAUGAagGg -3'
miRNA:   3'- gCUCCGCU---CGGAC-----GGCUG-CUACUagC- -5'
7324 3' -57.2 NC_001900.1 + 38741 0.7 0.361096
Target:  5'- cCGAGGCu-GCCUGgCGaucccguacauGCGGUGGUCGc -3'
miRNA:   3'- -GCUCCGcuCGGACgGC-----------UGCUACUAGC- -5'
7324 3' -57.2 NC_001900.1 + 30250 0.7 0.344452
Target:  5'- gGAGGCGAGaaagcucaCCUgGCCGA-GAUGGUCc -3'
miRNA:   3'- gCUCCGCUC--------GGA-CGGCUgCUACUAGc -5'
7324 3' -57.2 NC_001900.1 + 25814 0.73 0.256343
Target:  5'- cCGGGGCGcGGCCcgcGUCGGCGAgaaGAUCGu -3'
miRNA:   3'- -GCUCCGC-UCGGa--CGGCUGCUa--CUAGC- -5'
7324 3' -57.2 NC_001900.1 + 10489 0.74 0.219671
Target:  5'- aGAGGcCGcgaugggccucGGCCUGCUGggcACGAUGGUCGa -3'
miRNA:   3'- gCUCC-GC-----------UCGGACGGC---UGCUACUAGC- -5'
7324 3' -57.2 NC_001900.1 + 23303 0.76 0.151241
Target:  5'- -cAGGCGAGCCUGCagcuCGGCGAUGGcagacgaguUCGa -3'
miRNA:   3'- gcUCCGCUCGGACG----GCUGCUACU---------AGC- -5'
7324 3' -57.2 NC_001900.1 + 25182 1.1 0.000562
Target:  5'- aCGAGGCGAGCCUGCCGACGAUGAUCGa -3'
miRNA:   3'- -GCUCCGCUCGGACGGCUGCUACUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.