miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7325 3' -56.7 NC_001900.1 + 4088 0.66 0.612094
Target:  5'- gAUGGUCAgGCGGUccuugccugGCUCGAcCACc -3'
miRNA:   3'- -UGCCGGUgCGCCAuca------CGAGCUuGUG- -5'
7325 3' -56.7 NC_001900.1 + 1216 0.66 0.610992
Target:  5'- cCGGCaACGCaggcaccGGUGGUGUacUCGGugGCg -3'
miRNA:   3'- uGCCGgUGCG-------CCAUCACG--AGCUugUG- -5'
7325 3' -56.7 NC_001900.1 + 28829 0.66 0.601084
Target:  5'- gUGGCCcccgaaccagAC-CGGagccauGUGCUCGAACGCa -3'
miRNA:   3'- uGCCGG----------UGcGCCau----CACGAGCUUGUG- -5'
7325 3' -56.7 NC_001900.1 + 24814 0.66 0.601084
Target:  5'- gGCGGUggCACGCucaucgcugccGGUGGUGCUgGAGgCAa -3'
miRNA:   3'- -UGCCG--GUGCG-----------CCAUCACGAgCUU-GUg -5'
7325 3' -56.7 NC_001900.1 + 19609 0.66 0.589005
Target:  5'- cACGGCCACgGCGGUguccagaAGUucgGgUCGAACc- -3'
miRNA:   3'- -UGCCGGUG-CGCCA-------UCA---CgAGCUUGug -5'
7325 3' -56.7 NC_001900.1 + 3568 0.67 0.546607
Target:  5'- cCGGCCAgacccUGCGG--GUuCUCGGACACg -3'
miRNA:   3'- uGCCGGU-----GCGCCauCAcGAGCUUGUG- -5'
7325 3' -56.7 NC_001900.1 + 977 0.67 0.535883
Target:  5'- uACGGCCGgcUGCGGUAcUGCgCGA-CAUg -3'
miRNA:   3'- -UGCCGGU--GCGCCAUcACGaGCUuGUG- -5'
7325 3' -56.7 NC_001900.1 + 6945 0.67 0.525234
Target:  5'- uCGGaggCAgGauGUGGUGCUUGAGCACc -3'
miRNA:   3'- uGCCg--GUgCgcCAUCACGAGCUUGUG- -5'
7325 3' -56.7 NC_001900.1 + 42474 0.67 0.510462
Target:  5'- cGCGGUCAgucuccauccugaGCGGaUGGUcGCUCGAGCGa -3'
miRNA:   3'- -UGCCGGUg------------CGCC-AUCA-CGAGCUUGUg -5'
7325 3' -56.7 NC_001900.1 + 8442 0.67 0.504184
Target:  5'- gGCaGCCACGUGG-AGUcGCcUCGGGCGa -3'
miRNA:   3'- -UGcCGGUGCGCCaUCA-CG-AGCUUGUg -5'
7325 3' -56.7 NC_001900.1 + 42081 0.68 0.493797
Target:  5'- cCGGUgACGUGGUGGaGCcCGAucACGCa -3'
miRNA:   3'- uGCCGgUGCGCCAUCaCGaGCU--UGUG- -5'
7325 3' -56.7 NC_001900.1 + 7904 0.68 0.483508
Target:  5'- gACGGCCGCGaCGGUGauccacgcUGCg-GGGCGCg -3'
miRNA:   3'- -UGCCGGUGC-GCCAUc-------ACGagCUUGUG- -5'
7325 3' -56.7 NC_001900.1 + 39145 0.68 0.473324
Target:  5'- gACGGCCgggggcuuACGCaGGUAGUcgaucgcucGCUgGAGCAUc -3'
miRNA:   3'- -UGCCGG--------UGCG-CCAUCA---------CGAgCUUGUG- -5'
7325 3' -56.7 NC_001900.1 + 25951 0.68 0.453287
Target:  5'- gUGGCC--GgGGaGGUGUUCGAGCACu -3'
miRNA:   3'- uGCCGGugCgCCaUCACGAGCUUGUG- -5'
7325 3' -56.7 NC_001900.1 + 45727 0.69 0.43372
Target:  5'- gUGGCCGCuGCGGUGGaUGaCUCGAc--- -3'
miRNA:   3'- uGCCGGUG-CGCCAUC-AC-GAGCUugug -5'
7325 3' -56.7 NC_001900.1 + 3401 0.7 0.37811
Target:  5'- -aGGCCAgGgGGUGGgcUGCUUGGugACc -3'
miRNA:   3'- ugCCGGUgCgCCAUC--ACGAGCUugUG- -5'
7325 3' -56.7 NC_001900.1 + 10414 0.74 0.206423
Target:  5'- cGCGGCgUACGuCGG-GGUGCUCGGGuCACg -3'
miRNA:   3'- -UGCCG-GUGC-GCCaUCACGAGCUU-GUG- -5'
7325 3' -56.7 NC_001900.1 + 40840 0.76 0.153139
Target:  5'- uAUGGCCugGUGGUGGUucacggcggcGCUCGcGGCGCu -3'
miRNA:   3'- -UGCCGGugCGCCAUCA----------CGAGC-UUGUG- -5'
7325 3' -56.7 NC_001900.1 + 25865 1.08 0.000686
Target:  5'- gACGGCCACGCGGUAGUGCUCGAACACc -3'
miRNA:   3'- -UGCCGGUGCGCCAUCACGAGCUUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.