Results 1 - 19 of 19 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7325 | 3' | -56.7 | NC_001900.1 | + | 4088 | 0.66 | 0.612094 |
Target: 5'- gAUGGUCAgGCGGUccuugccugGCUCGAcCACc -3' miRNA: 3'- -UGCCGGUgCGCCAuca------CGAGCUuGUG- -5' |
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7325 | 3' | -56.7 | NC_001900.1 | + | 40840 | 0.76 | 0.153139 |
Target: 5'- uAUGGCCugGUGGUGGUucacggcggcGCUCGcGGCGCu -3' miRNA: 3'- -UGCCGGugCGCCAUCA----------CGAGC-UUGUG- -5' |
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7325 | 3' | -56.7 | NC_001900.1 | + | 10414 | 0.74 | 0.206423 |
Target: 5'- cGCGGCgUACGuCGG-GGUGCUCGGGuCACg -3' miRNA: 3'- -UGCCG-GUGC-GCCaUCACGAGCUU-GUG- -5' |
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7325 | 3' | -56.7 | NC_001900.1 | + | 3401 | 0.7 | 0.37811 |
Target: 5'- -aGGCCAgGgGGUGGgcUGCUUGGugACc -3' miRNA: 3'- ugCCGGUgCgCCAUC--ACGAGCUugUG- -5' |
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7325 | 3' | -56.7 | NC_001900.1 | + | 25951 | 0.68 | 0.453287 |
Target: 5'- gUGGCC--GgGGaGGUGUUCGAGCACu -3' miRNA: 3'- uGCCGGugCgCCaUCACGAGCUUGUG- -5' |
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7325 | 3' | -56.7 | NC_001900.1 | + | 7904 | 0.68 | 0.483508 |
Target: 5'- gACGGCCGCGaCGGUGauccacgcUGCg-GGGCGCg -3' miRNA: 3'- -UGCCGGUGC-GCCAUc-------ACGagCUUGUG- -5' |
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7325 | 3' | -56.7 | NC_001900.1 | + | 8442 | 0.67 | 0.504184 |
Target: 5'- gGCaGCCACGUGG-AGUcGCcUCGGGCGa -3' miRNA: 3'- -UGcCGGUGCGCCaUCA-CG-AGCUUGUg -5' |
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7325 | 3' | -56.7 | NC_001900.1 | + | 42474 | 0.67 | 0.510462 |
Target: 5'- cGCGGUCAgucuccauccugaGCGGaUGGUcGCUCGAGCGa -3' miRNA: 3'- -UGCCGGUg------------CGCC-AUCA-CGAGCUUGUg -5' |
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7325 | 3' | -56.7 | NC_001900.1 | + | 6945 | 0.67 | 0.525234 |
Target: 5'- uCGGaggCAgGauGUGGUGCUUGAGCACc -3' miRNA: 3'- uGCCg--GUgCgcCAUCACGAGCUUGUG- -5' |
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7325 | 3' | -56.7 | NC_001900.1 | + | 3568 | 0.67 | 0.546607 |
Target: 5'- cCGGCCAgacccUGCGG--GUuCUCGGACACg -3' miRNA: 3'- uGCCGGU-----GCGCCauCAcGAGCUUGUG- -5' |
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7325 | 3' | -56.7 | NC_001900.1 | + | 19609 | 0.66 | 0.589005 |
Target: 5'- cACGGCCACgGCGGUguccagaAGUucgGgUCGAACc- -3' miRNA: 3'- -UGCCGGUG-CGCCA-------UCA---CgAGCUUGug -5' |
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7325 | 3' | -56.7 | NC_001900.1 | + | 24814 | 0.66 | 0.601084 |
Target: 5'- gGCGGUggCACGCucaucgcugccGGUGGUGCUgGAGgCAa -3' miRNA: 3'- -UGCCG--GUGCG-----------CCAUCACGAgCUU-GUg -5' |
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7325 | 3' | -56.7 | NC_001900.1 | + | 28829 | 0.66 | 0.601084 |
Target: 5'- gUGGCCcccgaaccagAC-CGGagccauGUGCUCGAACGCa -3' miRNA: 3'- uGCCGG----------UGcGCCau----CACGAGCUUGUG- -5' |
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7325 | 3' | -56.7 | NC_001900.1 | + | 977 | 0.67 | 0.535883 |
Target: 5'- uACGGCCGgcUGCGGUAcUGCgCGA-CAUg -3' miRNA: 3'- -UGCCGGU--GCGCCAUcACGaGCUuGUG- -5' |
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7325 | 3' | -56.7 | NC_001900.1 | + | 42081 | 0.68 | 0.493797 |
Target: 5'- cCGGUgACGUGGUGGaGCcCGAucACGCa -3' miRNA: 3'- uGCCGgUGCGCCAUCaCGaGCU--UGUG- -5' |
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7325 | 3' | -56.7 | NC_001900.1 | + | 39145 | 0.68 | 0.473324 |
Target: 5'- gACGGCCgggggcuuACGCaGGUAGUcgaucgcucGCUgGAGCAUc -3' miRNA: 3'- -UGCCGG--------UGCG-CCAUCA---------CGAgCUUGUG- -5' |
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7325 | 3' | -56.7 | NC_001900.1 | + | 45727 | 0.69 | 0.43372 |
Target: 5'- gUGGCCGCuGCGGUGGaUGaCUCGAc--- -3' miRNA: 3'- uGCCGGUG-CGCCAUC-AC-GAGCUugug -5' |
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7325 | 3' | -56.7 | NC_001900.1 | + | 25865 | 1.08 | 0.000686 |
Target: 5'- gACGGCCACGCGGUAGUGCUCGAACACc -3' miRNA: 3'- -UGCCGGUGCGCCAUCACGAGCUUGUG- -5' |
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7325 | 3' | -56.7 | NC_001900.1 | + | 1216 | 0.66 | 0.610992 |
Target: 5'- cCGGCaACGCaggcaccGGUGGUGUacUCGGugGCg -3' miRNA: 3'- uGCCGgUGCG-------CCAUCACG--AGCUugUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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