miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7327 3' -58.8 NC_001900.1 + 20502 0.66 0.450299
Target:  5'- -cGGGCCG-GCCAagugguGCUUGCUGgUCa -3'
miRNA:   3'- uaCUCGGCuCGGUgu----CGAACGAC-GGc -5'
7327 3' -58.8 NC_001900.1 + 2445 0.66 0.440443
Target:  5'- uGUGAgGUCGAcgGCCcCGGCUgcguccggGCUGCCa -3'
miRNA:   3'- -UACU-CGGCU--CGGuGUCGAa-------CGACGGc -5'
7327 3' -58.8 NC_001900.1 + 18743 0.66 0.440443
Target:  5'- -cGAGCUGcGCCuGCAGCgccGCacgGCCGg -3'
miRNA:   3'- uaCUCGGCuCGG-UGUCGaa-CGa--CGGC- -5'
7327 3' -58.8 NC_001900.1 + 36391 0.66 0.430711
Target:  5'- uUG-GCCGAGCCcgACAGgaUGUUGUgGa -3'
miRNA:   3'- uACuCGGCUCGG--UGUCgaACGACGgC- -5'
7327 3' -58.8 NC_001900.1 + 18438 0.66 0.421105
Target:  5'- --aAGCCG-GUCACAGCguucuucacGCUGCUGg -3'
miRNA:   3'- uacUCGGCuCGGUGUCGaa-------CGACGGC- -5'
7327 3' -58.8 NC_001900.1 + 18229 0.66 0.41163
Target:  5'- -gGAGCCGAcCCACucGGCgacUGC-GCCGa -3'
miRNA:   3'- uaCUCGGCUcGGUG--UCGa--ACGaCGGC- -5'
7327 3' -58.8 NC_001900.1 + 1824 0.67 0.402289
Target:  5'- -cGGGCuUGAGgUAgAGCUuggUGCUGCCGu -3'
miRNA:   3'- uaCUCG-GCUCgGUgUCGA---ACGACGGC- -5'
7327 3' -58.8 NC_001900.1 + 34875 0.67 0.402289
Target:  5'- -aGAgGCCGuGCCGCcgaacgucuucAGCUUGCgacccGCCGc -3'
miRNA:   3'- uaCU-CGGCuCGGUG-----------UCGAACGa----CGGC- -5'
7327 3' -58.8 NC_001900.1 + 6324 0.67 0.393083
Target:  5'- -cGcAGCCGcaccGGCCACGGCc-GCUGUCa -3'
miRNA:   3'- uaC-UCGGC----UCGGUGUCGaaCGACGGc -5'
7327 3' -58.8 NC_001900.1 + 25552 0.67 0.3663
Target:  5'- -cGGGCCguggGAGCCAC-GCUggcgGCUcagGCCGg -3'
miRNA:   3'- uaCUCGG----CUCGGUGuCGAa---CGA---CGGC- -5'
7327 3' -58.8 NC_001900.1 + 31624 0.67 0.3663
Target:  5'- -cGGGCCGA-CCGgAGCcaaGCUGCCu -3'
miRNA:   3'- uaCUCGGCUcGGUgUCGaa-CGACGGc -5'
7327 3' -58.8 NC_001900.1 + 15781 0.68 0.349156
Target:  5'- -cGAGCUGaAGCCGCuGCUgaaGCUggGCCa -3'
miRNA:   3'- uaCUCGGC-UCGGUGuCGAa--CGA--CGGc -5'
7327 3' -58.8 NC_001900.1 + 33227 0.68 0.335858
Target:  5'- cGUGAcGCUGgcguacuucggcaccAGCCACGGCgcggaguaGCUGCCGu -3'
miRNA:   3'- -UACU-CGGC---------------UCGGUGUCGaa------CGACGGC- -5'
7327 3' -58.8 NC_001900.1 + 33067 0.69 0.293739
Target:  5'- ---cGCCGcuaccGCCGCcaccggaguucGGCUUGCUGCCGc -3'
miRNA:   3'- uacuCGGCu----CGGUG-----------UCGAACGACGGC- -5'
7327 3' -58.8 NC_001900.1 + 27042 0.71 0.220896
Target:  5'- cUGAGCCGAcacgguugguacGCCugGGC--GCUGCUGa -3'
miRNA:   3'- uACUCGGCU------------CGGugUCGaaCGACGGC- -5'
7327 3' -58.8 NC_001900.1 + 27468 0.72 0.164025
Target:  5'- -gGGGCCGAGCCGCAcgGCcUUGa-GCCGg -3'
miRNA:   3'- uaCUCGGCUCGGUGU--CG-AACgaCGGC- -5'
7327 3' -58.8 NC_001900.1 + 28327 1.06 0.000472
Target:  5'- aAUGAGCCGAGCCACAGCUUGCUGCCGu -3'
miRNA:   3'- -UACUCGGCUCGGUGUCGAACGACGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.