miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7327 5' -55.5 NC_001900.1 + 6793 0.66 0.646922
Target:  5'- aUCGggaaggccGCAGCGggGUaguugccgauggGCUGCCACcgGUAg -3'
miRNA:   3'- cAGC--------UGUCGCuuCG------------UGACGGUGa-CGU- -5'
7327 5' -55.5 NC_001900.1 + 3186 0.66 0.635666
Target:  5'- cUCGccuUGGCGAGGCGCUGCUugaGCAc -3'
miRNA:   3'- cAGCu--GUCGCUUCGUGACGGugaCGU- -5'
7327 5' -55.5 NC_001900.1 + 17579 0.66 0.624407
Target:  5'- cGUCGACAGCGGAccaccgaGCUGaCCcaucgcCUGCAg -3'
miRNA:   3'- -CAGCUGUCGCUUcg-----UGAC-GGu-----GACGU- -5'
7327 5' -55.5 NC_001900.1 + 28454 0.66 0.624407
Target:  5'- uUCGACGGUGAcgAGCAcCUGCagugGCAg -3'
miRNA:   3'- cAGCUGUCGCU--UCGU-GACGgugaCGU- -5'
7327 5' -55.5 NC_001900.1 + 13007 0.66 0.613156
Target:  5'- cUCGACAcggacuGCGAcgaGGUuguGCUGCCACaGCGa -3'
miRNA:   3'- cAGCUGU------CGCU---UCG---UGACGGUGaCGU- -5'
7327 5' -55.5 NC_001900.1 + 14373 0.66 0.612031
Target:  5'- gGUCGACGGCGAuguGgACUuCCACacgguccUGCAc -3'
miRNA:   3'- -CAGCUGUCGCUu--CgUGAcGGUG-------ACGU- -5'
7327 5' -55.5 NC_001900.1 + 26224 0.67 0.590714
Target:  5'- cUCGACcGUGAuGGCACUcGCCGCaGCc -3'
miRNA:   3'- cAGCUGuCGCU-UCGUGA-CGGUGaCGu -5'
7327 5' -55.5 NC_001900.1 + 3382 0.67 0.557347
Target:  5'- -cCGGCGGCG-AGCACaaCgCGCUGCAc -3'
miRNA:   3'- caGCUGUCGCuUCGUGacG-GUGACGU- -5'
7327 5' -55.5 NC_001900.1 + 6402 0.68 0.524539
Target:  5'- cUUGACAGCGGccguGGcCGgUGCgGCUGCGc -3'
miRNA:   3'- cAGCUGUCGCU----UC-GUgACGgUGACGU- -5'
7327 5' -55.5 NC_001900.1 + 13713 0.68 0.523458
Target:  5'- aGUCGACGccGCGAugugcgaccacgaAGCGgauccuccgguCUGCUACUGCGu -3'
miRNA:   3'- -CAGCUGU--CGCU-------------UCGU-----------GACGGUGACGU- -5'
7327 5' -55.5 NC_001900.1 + 8700 0.68 0.50308
Target:  5'- -aCGGCGGCGAAGUGCcccgcgaguucgUGgaCGCUGCAg -3'
miRNA:   3'- caGCUGUCGCUUCGUG------------ACg-GUGACGU- -5'
7327 5' -55.5 NC_001900.1 + 46543 0.69 0.45124
Target:  5'- aUCGACGGCGAuuacgccgcguGGgACUGCuCACggUGCGg -3'
miRNA:   3'- cAGCUGUCGCU-----------UCgUGACG-GUG--ACGU- -5'
7327 5' -55.5 NC_001900.1 + 24887 0.7 0.411952
Target:  5'- -cCGGCAGCGAugAGCG-UGCCACcGCc -3'
miRNA:   3'- caGCUGUCGCU--UCGUgACGGUGaCGu -5'
7327 5' -55.5 NC_001900.1 + 40305 0.7 0.393118
Target:  5'- gGUCGGCAGUGAGcCGCUGCgGCcGUg -3'
miRNA:   3'- -CAGCUGUCGCUUcGUGACGgUGaCGu -5'
7327 5' -55.5 NC_001900.1 + 44703 0.71 0.33176
Target:  5'- -gCGGCAGCcAGGcCGCUgGCCGCUGCc -3'
miRNA:   3'- caGCUGUCGcUUC-GUGA-CGGUGACGu -5'
7327 5' -55.5 NC_001900.1 + 28361 0.93 0.010189
Target:  5'- gGUCGACAGCGAAGaC-CUGCCACUGCAg -3'
miRNA:   3'- -CAGCUGUCGCUUC-GuGACGGUGACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.