Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7327 | 5' | -55.5 | NC_001900.1 | + | 28361 | 0.93 | 0.010189 |
Target: 5'- gGUCGACAGCGAAGaC-CUGCCACUGCAg -3' miRNA: 3'- -CAGCUGUCGCUUC-GuGACGGUGACGU- -5' |
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7327 | 5' | -55.5 | NC_001900.1 | + | 44703 | 0.71 | 0.33176 |
Target: 5'- -gCGGCAGCcAGGcCGCUgGCCGCUGCc -3' miRNA: 3'- caGCUGUCGcUUC-GUGA-CGGUGACGu -5' |
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7327 | 5' | -55.5 | NC_001900.1 | + | 40305 | 0.7 | 0.393118 |
Target: 5'- gGUCGGCAGUGAGcCGCUGCgGCcGUg -3' miRNA: 3'- -CAGCUGUCGCUUcGUGACGgUGaCGu -5' |
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7327 | 5' | -55.5 | NC_001900.1 | + | 24887 | 0.7 | 0.411952 |
Target: 5'- -cCGGCAGCGAugAGCG-UGCCACcGCc -3' miRNA: 3'- caGCUGUCGCU--UCGUgACGGUGaCGu -5' |
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7327 | 5' | -55.5 | NC_001900.1 | + | 46543 | 0.69 | 0.45124 |
Target: 5'- aUCGACGGCGAuuacgccgcguGGgACUGCuCACggUGCGg -3' miRNA: 3'- cAGCUGUCGCU-----------UCgUGACG-GUG--ACGU- -5' |
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7327 | 5' | -55.5 | NC_001900.1 | + | 8700 | 0.68 | 0.50308 |
Target: 5'- -aCGGCGGCGAAGUGCcccgcgaguucgUGgaCGCUGCAg -3' miRNA: 3'- caGCUGUCGCUUCGUG------------ACg-GUGACGU- -5' |
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7327 | 5' | -55.5 | NC_001900.1 | + | 13713 | 0.68 | 0.523458 |
Target: 5'- aGUCGACGccGCGAugugcgaccacgaAGCGgauccuccgguCUGCUACUGCGu -3' miRNA: 3'- -CAGCUGU--CGCU-------------UCGU-----------GACGGUGACGU- -5' |
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7327 | 5' | -55.5 | NC_001900.1 | + | 6402 | 0.68 | 0.524539 |
Target: 5'- cUUGACAGCGGccguGGcCGgUGCgGCUGCGc -3' miRNA: 3'- cAGCUGUCGCU----UC-GUgACGgUGACGU- -5' |
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7327 | 5' | -55.5 | NC_001900.1 | + | 3382 | 0.67 | 0.557347 |
Target: 5'- -cCGGCGGCG-AGCACaaCgCGCUGCAc -3' miRNA: 3'- caGCUGUCGCuUCGUGacG-GUGACGU- -5' |
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7327 | 5' | -55.5 | NC_001900.1 | + | 26224 | 0.67 | 0.590714 |
Target: 5'- cUCGACcGUGAuGGCACUcGCCGCaGCc -3' miRNA: 3'- cAGCUGuCGCU-UCGUGA-CGGUGaCGu -5' |
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7327 | 5' | -55.5 | NC_001900.1 | + | 14373 | 0.66 | 0.612031 |
Target: 5'- gGUCGACGGCGAuguGgACUuCCACacgguccUGCAc -3' miRNA: 3'- -CAGCUGUCGCUu--CgUGAcGGUG-------ACGU- -5' |
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7327 | 5' | -55.5 | NC_001900.1 | + | 13007 | 0.66 | 0.613156 |
Target: 5'- cUCGACAcggacuGCGAcgaGGUuguGCUGCCACaGCGa -3' miRNA: 3'- cAGCUGU------CGCU---UCG---UGACGGUGaCGU- -5' |
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7327 | 5' | -55.5 | NC_001900.1 | + | 28454 | 0.66 | 0.624407 |
Target: 5'- uUCGACGGUGAcgAGCAcCUGCagugGCAg -3' miRNA: 3'- cAGCUGUCGCU--UCGU-GACGgugaCGU- -5' |
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7327 | 5' | -55.5 | NC_001900.1 | + | 17579 | 0.66 | 0.624407 |
Target: 5'- cGUCGACAGCGGAccaccgaGCUGaCCcaucgcCUGCAg -3' miRNA: 3'- -CAGCUGUCGCUUcg-----UGAC-GGu-----GACGU- -5' |
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7327 | 5' | -55.5 | NC_001900.1 | + | 3186 | 0.66 | 0.635666 |
Target: 5'- cUCGccuUGGCGAGGCGCUGCUugaGCAc -3' miRNA: 3'- cAGCu--GUCGCUUCGUGACGGugaCGU- -5' |
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7327 | 5' | -55.5 | NC_001900.1 | + | 6793 | 0.66 | 0.646922 |
Target: 5'- aUCGggaaggccGCAGCGggGUaguugccgauggGCUGCCACcgGUAg -3' miRNA: 3'- cAGC--------UGUCGCuuCG------------UGACGGUGa-CGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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