miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7328 3' -54.1 NC_001900.1 + 5213 0.66 0.808202
Target:  5'- gCGCgugCGCCGUCGUagaGGaacacccccacgccgUUGAcuUCUCCUc -3'
miRNA:   3'- gGUGa--GCGGCAGCA---CC---------------AACU--AGAGGG- -5'
7328 3' -54.1 NC_001900.1 + 29804 0.66 0.775063
Target:  5'- uCCGCUCcggGUCGUCcuUGGUgaugUGGUC-CCCg -3'
miRNA:   3'- -GGUGAG---CGGCAGc-ACCA----ACUAGaGGG- -5'
7328 3' -54.1 NC_001900.1 + 17976 0.66 0.775063
Target:  5'- -aGCUCGCucCGUCGcUGGUUcaGAUCgUCCa -3'
miRNA:   3'- ggUGAGCG--GCAGC-ACCAA--CUAG-AGGg -5'
7328 3' -54.1 NC_001900.1 + 19545 0.67 0.733934
Target:  5'- aCAC-CGCCGUggcCGUGGgagGAaCUgCCCa -3'
miRNA:   3'- gGUGaGCGGCA---GCACCaa-CUaGA-GGG- -5'
7328 3' -54.1 NC_001900.1 + 35995 0.67 0.723369
Target:  5'- aUCGCgauguUCGCCGUCG-GGUcagagUGGccCUCCCc -3'
miRNA:   3'- -GGUG-----AGCGGCAGCaCCA-----ACUa-GAGGG- -5'
7328 3' -54.1 NC_001900.1 + 32601 0.68 0.701979
Target:  5'- cCCACgUCGagGaUGUGGUUGAgguagucgacguUCUCCCg -3'
miRNA:   3'- -GGUG-AGCggCaGCACCAACU------------AGAGGG- -5'
7328 3' -54.1 NC_001900.1 + 44833 0.68 0.701979
Target:  5'- gCCAuUUCGCCGUUGccGGUcaacgcGGUCUCCa -3'
miRNA:   3'- -GGU-GAGCGGCAGCa-CCAa-----CUAGAGGg -5'
7328 3' -54.1 NC_001900.1 + 34728 0.68 0.647512
Target:  5'- aCACUgCGCgauggCGUGGUcGAUCUCCa -3'
miRNA:   3'- gGUGA-GCGgca--GCACCAaCUAGAGGg -5'
7328 3' -54.1 NC_001900.1 + 24983 0.7 0.528045
Target:  5'- gCGC-CGCCGUCGUaGGUccGGUCUCg- -3'
miRNA:   3'- gGUGaGCGGCAGCA-CCAa-CUAGAGgg -5'
7328 3' -54.1 NC_001900.1 + 22997 0.72 0.446424
Target:  5'- gCGCUCGucagaCCGUUGaccagagccUGGggGAUCUCCCc -3'
miRNA:   3'- gGUGAGC-----GGCAGC---------ACCaaCUAGAGGG- -5'
7328 3' -54.1 NC_001900.1 + 36527 0.73 0.390052
Target:  5'- ----cCGCUGUCa-GGUUGGUCUCCCa -3'
miRNA:   3'- ggugaGCGGCAGcaCCAACUAGAGGG- -5'
7328 3' -54.1 NC_001900.1 + 28575 1.15 0.000581
Target:  5'- cCCACUCGCCGUCGUGGUUGAUCUCCCa -3'
miRNA:   3'- -GGUGAGCGGCAGCACCAACUAGAGGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.