miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7328 5' -52.6 NC_001900.1 + 25452 0.66 0.787167
Target:  5'- -aGAugGCCuCAgcagCCcgUGACGAGGAGa -3'
miRNA:   3'- aaCUugCGGuGUa---GGa-GCUGUUCCUU- -5'
7328 5' -52.6 NC_001900.1 + 33789 0.66 0.787167
Target:  5'- -cGAACcgugcgGCCACggCCUCGAcCAAGGu- -3'
miRNA:   3'- aaCUUG------CGGUGuaGGAGCU-GUUCCuu -5'
7328 5' -52.6 NC_001900.1 + 27085 0.66 0.776724
Target:  5'- -cGGuCGCCAUcgUCgCGACGAGGAu -3'
miRNA:   3'- aaCUuGCGGUGuaGGaGCUGUUCCUu -5'
7328 5' -52.6 NC_001900.1 + 44404 0.66 0.755356
Target:  5'- --cGACGCCGuCGUCguggUCGACGGGGAGc -3'
miRNA:   3'- aacUUGCGGU-GUAGg---AGCUGUUCCUU- -5'
7328 5' -52.6 NC_001900.1 + 1406 0.66 0.755356
Target:  5'- gUUGAACGCCGCAcgCUUCuGCGcGGGGu -3'
miRNA:   3'- -AACUUGCGGUGUa-GGAGcUGUuCCUU- -5'
7328 5' -52.6 NC_001900.1 + 1184 0.67 0.733433
Target:  5'- -cGggUGCUguuGCGUCCUCGGguucCAGGGGc -3'
miRNA:   3'- aaCuuGCGG---UGUAGGAGCU----GUUCCUu -5'
7328 5' -52.6 NC_001900.1 + 148 0.67 0.711061
Target:  5'- cUGGugGCuCACAgcgCCUgGGCGAGGc- -3'
miRNA:   3'- aACUugCG-GUGUa--GGAgCUGUUCCuu -5'
7328 5' -52.6 NC_001900.1 + 1118 0.67 0.69974
Target:  5'- -aGGACGCaacaGCA-CC-CGGCAAGGAGc -3'
miRNA:   3'- aaCUUGCGg---UGUaGGaGCUGUUCCUU- -5'
7328 5' -52.6 NC_001900.1 + 20384 0.67 0.688345
Target:  5'- -cGAGCGCCuuGC-UUCUCGACGuugAGGAu -3'
miRNA:   3'- aaCUUGCGG--UGuAGGAGCUGU---UCCUu -5'
7328 5' -52.6 NC_001900.1 + 15973 0.68 0.676892
Target:  5'- cUGAuCGCCGCG--CUgGACGAGGAAg -3'
miRNA:   3'- aACUuGCGGUGUagGAgCUGUUCCUU- -5'
7328 5' -52.6 NC_001900.1 + 13023 0.68 0.665391
Target:  5'- -gGAACGCgUACucagCCUCGACAcGGAc -3'
miRNA:   3'- aaCUUGCG-GUGua--GGAGCUGUuCCUu -5'
7328 5' -52.6 NC_001900.1 + 8916 0.69 0.573135
Target:  5'- gUGAGCGCCugGaggacgcggUCCUCGaagGCGAGGu- -3'
miRNA:   3'- aACUUGCGGugU---------AGGAGC---UGUUCCuu -5'
7328 5' -52.6 NC_001900.1 + 3600 0.7 0.539135
Target:  5'- -cGAGCGCCGCGUCgaUGGCGuccuGGAu -3'
miRNA:   3'- aaCUUGCGGUGUAGgaGCUGUu---CCUu -5'
7328 5' -52.6 NC_001900.1 + 32685 0.73 0.391776
Target:  5'- -aGAACGucgacuaccucaaCCACAUCCUCGACGuGGGc -3'
miRNA:   3'- aaCUUGC-------------GGUGUAGGAGCUGUuCCUu -5'
7328 5' -52.6 NC_001900.1 + 28609 1.04 0.002779
Target:  5'- cUUGAACGCCACAUCCUCGACAAGGAAa -3'
miRNA:   3'- -AACUUGCGGUGUAGGAGCUGUUCCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.