miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
733 3' -59.5 AC_000020.1 + 21598 1.12 0.000103
Target:  5'- aAGCCGUUGAGGAGCCAAGGGGCCACCa -3'
miRNA:   3'- -UCGGCAACUCCUCGGUUCCCCGGUGG- -5'
733 3' -59.5 AC_000020.1 + 14176 0.74 0.092585
Target:  5'- gGGCCucgUGGGGcAGCaAAGGGcGCCGCCg -3'
miRNA:   3'- -UCGGca-ACUCC-UCGgUUCCC-CGGUGG- -5'
733 3' -59.5 AC_000020.1 + 12088 0.69 0.203815
Target:  5'- aAGCCcucaggGGGGAGCCAGcGGGGauuCAUCa -3'
miRNA:   3'- -UCGGcaa---CUCCUCGGUU-CCCCg--GUGG- -5'
733 3' -59.5 AC_000020.1 + 14205 0.67 0.279978
Target:  5'- cGCCGUcaagGccGAGCCcgcGGGGCC-CCu -3'
miRNA:   3'- uCGGCAa---CucCUCGGuu-CCCCGGuGG- -5'
733 3' -59.5 AC_000020.1 + 1880 0.66 0.334035
Target:  5'- -uCCGUgcucGAGGAGC--AGGGGuCCGCg -3'
miRNA:   3'- ucGGCAa---CUCCUCGguUCCCC-GGUGg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.