miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
733 5' -54.5 AC_000020.1 + 4975 0.66 0.545391
Target:  5'- ----gGGCCaaagGUCAuGCCACCuCCACc -3'
miRNA:   3'- cuuuaUCGGg---CAGUuCGGUGGcGGUG- -5'
733 5' -54.5 AC_000020.1 + 10464 0.66 0.556809
Target:  5'- -cAAUAGUCUGUaacagguuuaaCAGGuCCACCaGCCACc -3'
miRNA:   3'- cuUUAUCGGGCA-----------GUUC-GGUGG-CGGUG- -5'
733 5' -54.5 AC_000020.1 + 10766 0.66 0.579838
Target:  5'- ----cAGUCCGUUAgaAGCCAaggcUUGCCGCa -3'
miRNA:   3'- cuuuaUCGGGCAGU--UCGGU----GGCGGUG- -5'
733 5' -54.5 AC_000020.1 + 12044 0.66 0.53405
Target:  5'- aAAGUAGUCUG--GAGCCAuaGCCGCa -3'
miRNA:   3'- cUUUAUCGGGCagUUCGGUggCGGUG- -5'
733 5' -54.5 AC_000020.1 + 14176 0.67 0.51163
Target:  5'- ----gGGCCuCGUgGGGCagcaaagggCGCCGCCGCc -3'
miRNA:   3'- cuuuaUCGG-GCAgUUCG---------GUGGCGGUG- -5'
733 5' -54.5 AC_000020.1 + 21561 1.09 0.000482
Target:  5'- cGAAAUAGCCCGUCAAGCCACCGCCACc -3'
miRNA:   3'- -CUUUAUCGGGCAGUUCGGUGGCGGUG- -5'
733 5' -54.5 AC_000020.1 + 21682 0.66 0.556809
Target:  5'- aGAAG-AGCCCGUCAgugGGaCUACCGUgGa -3'
miRNA:   3'- -CUUUaUCGGGCAGU---UC-GGUGGCGgUg -5'
733 5' -54.5 AC_000020.1 + 23976 0.66 0.545391
Target:  5'- ----gGGCCCa--AAGCCAgCCGCCGg -3'
miRNA:   3'- cuuuaUCGGGcagUUCGGU-GGCGGUg -5'
733 5' -54.5 AC_000020.1 + 30613 0.7 0.341443
Target:  5'- ----gGGUCCGUugcagauaucCAGGCUACCGCCGu -3'
miRNA:   3'- cuuuaUCGGGCA----------GUUCGGUGGCGGUg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.