Results 1 - 18 of 18 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7331 | 5' | -51.4 | NC_001900.1 | + | 33764 | 0.66 | 0.889851 |
Target: 5'- uCCAcGaUGuCCUcgGCGUC-UCGGCCGa -3' miRNA: 3'- -GGU-CaACuGGAaaUGCAGcAGCCGGU- -5' |
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7331 | 5' | -51.4 | NC_001900.1 | + | 23878 | 0.66 | 0.874402 |
Target: 5'- aUAGccGACCggagccCGUCGUCGGaCCAc -3' miRNA: 3'- gGUCaaCUGGaaau--GCAGCAGCC-GGU- -5' |
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7331 | 5' | -51.4 | NC_001900.1 | + | 23150 | 0.67 | 0.866279 |
Target: 5'- cCCGGgcgagGACCagacCGUCGUUGaGCCGg -3' miRNA: 3'- -GGUCaa---CUGGaaauGCAGCAGC-CGGU- -5' |
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7331 | 5' | -51.4 | NC_001900.1 | + | 23488 | 0.67 | 0.866279 |
Target: 5'- aCCAGaagaUGACgCU---CGUCGUCGGCa- -3' miRNA: 3'- -GGUCa---ACUG-GAaauGCAGCAGCCGgu -5' |
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7331 | 5' | -51.4 | NC_001900.1 | + | 31299 | 0.67 | 0.852753 |
Target: 5'- cCCGGUUcgucgcugacggcacGGCCaagaaggAgGUCGUCGGCCc -3' miRNA: 3'- -GGUCAA---------------CUGGaaa----UgCAGCAGCCGGu -5' |
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7331 | 5' | -51.4 | NC_001900.1 | + | 35847 | 0.67 | 0.849273 |
Target: 5'- gCAGgacGACCUggagcagUACGUCGgCGGCg- -3' miRNA: 3'- gGUCaa-CUGGAa------AUGCAGCaGCCGgu -5' |
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7331 | 5' | -51.4 | NC_001900.1 | + | 38933 | 0.67 | 0.831309 |
Target: 5'- gCAGUUGAacCCUUggAgGUCGUaacugacugCGGCCGa -3' miRNA: 3'- gGUCAACU--GGAAa-UgCAGCA---------GCCGGU- -5' |
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7331 | 5' | -51.4 | NC_001900.1 | + | 23956 | 0.68 | 0.821992 |
Target: 5'- cUCGGUccACCUcgaaaccgGCGUCGUCGGCa- -3' miRNA: 3'- -GGUCAacUGGAaa------UGCAGCAGCCGgu -5' |
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7331 | 5' | -51.4 | NC_001900.1 | + | 23534 | 0.68 | 0.792827 |
Target: 5'- gUCGG-UGACCgucuucUCGUCGGCCGg -3' miRNA: 3'- -GGUCaACUGGaaaugcAGCAGCCGGU- -5' |
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7331 | 5' | -51.4 | NC_001900.1 | + | 41472 | 0.69 | 0.772483 |
Target: 5'- -aAGUUGACCUgguagaaGUCGUCGGagaCGu -3' miRNA: 3'- ggUCAACUGGAaaug---CAGCAGCCg--GU- -5' |
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7331 | 5' | -51.4 | NC_001900.1 | + | 6412 | 0.69 | 0.762077 |
Target: 5'- gCUGGUUGACCUUgacaGCGgcCGU-GGCCGg -3' miRNA: 3'- -GGUCAACUGGAAa---UGCa-GCAgCCGGU- -5' |
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7331 | 5' | -51.4 | NC_001900.1 | + | 30595 | 0.69 | 0.751531 |
Target: 5'- aCCAGaucUUGGCC--UugGUCGUCuugugcuccuuGGCCAg -3' miRNA: 3'- -GGUC---AACUGGaaAugCAGCAG-----------CCGGU- -5' |
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7331 | 5' | -51.4 | NC_001900.1 | + | 5818 | 0.7 | 0.686004 |
Target: 5'- gCCAgGUUGuACCg--GCGUCGgCGGUCAu -3' miRNA: 3'- -GGU-CAAC-UGGaaaUGCAGCaGCCGGU- -5' |
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7331 | 5' | -51.4 | NC_001900.1 | + | 33669 | 0.7 | 0.679301 |
Target: 5'- --cGUUGGCCgugaagcucacaGCGUUGUCGGCCc -3' miRNA: 3'- gguCAACUGGaaa---------UGCAGCAGCCGGu -5' |
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7331 | 5' | -51.4 | NC_001900.1 | + | 31298 | 0.71 | 0.629786 |
Target: 5'- aCCgaAGUUGAUCgugGCGUUGUCGGUg- -3' miRNA: 3'- -GG--UCAACUGGaaaUGCAGCAGCCGgu -5' |
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7331 | 5' | -51.4 | NC_001900.1 | + | 28192 | 0.74 | 0.486711 |
Target: 5'- gCgAGcUGGCCUUgugcgAUGUCGUUGGCCu -3' miRNA: 3'- -GgUCaACUGGAAa----UGCAGCAGCCGGu -5' |
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7331 | 5' | -51.4 | NC_001900.1 | + | 588 | 0.77 | 0.335193 |
Target: 5'- -aGGUUGGCCggaacgUAgGUUGUCGGCCGc -3' miRNA: 3'- ggUCAACUGGaa----AUgCAGCAGCCGGU- -5' |
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7331 | 5' | -51.4 | NC_001900.1 | + | 28927 | 0.99 | 0.012293 |
Target: 5'- cCCAGUUGACCUUUAC-UCGUCGGCCAu -3' miRNA: 3'- -GGUCAACUGGAAAUGcAGCAGCCGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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