Results 1 - 20 of 20 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
7332 | 3' | -54.6 | NC_001900.1 | + | 40741 | 0.66 | 0.719281 |
Target: 5'- cAGCGAugucgucaGCgCCGCGAGCGCcg-CCGu- -3' miRNA: 3'- -UCGCU--------CGgGGUGCUUGCGaaaGGUug -5' |
|||||||
7332 | 3' | -54.6 | NC_001900.1 | + | 32686 | 0.66 | 0.719281 |
Target: 5'- cAGCGAaCUCCGCGAGuuCGUcugCCGACg -3' miRNA: 3'- -UCGCUcGGGGUGCUU--GCGaaaGGUUG- -5' |
|||||||
7332 | 3' | -54.6 | NC_001900.1 | + | 22503 | 0.66 | 0.719281 |
Target: 5'- -uCGAGCgCCGCGAACGCaucgCUggUg -3' miRNA: 3'- ucGCUCGgGGUGCUUGCGaaa-GGuuG- -5' |
|||||||
7332 | 3' | -54.6 | NC_001900.1 | + | 18771 | 0.66 | 0.719281 |
Target: 5'- cAGCGGGCgaugaCCCGCucguGAAgGCggcUUCCGGCu -3' miRNA: 3'- -UCGCUCG-----GGGUG----CUUgCGa--AAGGUUG- -5' |
|||||||
7332 | 3' | -54.6 | NC_001900.1 | + | 10714 | 0.66 | 0.708346 |
Target: 5'- cGGCGAGCCCCGCa---GUgaUCaCGGCc -3' miRNA: 3'- -UCGCUCGGGGUGcuugCGaaAG-GUUG- -5' |
|||||||
7332 | 3' | -54.6 | NC_001900.1 | + | 13262 | 0.66 | 0.708346 |
Target: 5'- uGCGAgGCuUCCGaGGACGC-UUCCAACc -3' miRNA: 3'- uCGCU-CG-GGGUgCUUGCGaAAGGUUG- -5' |
|||||||
7332 | 3' | -54.6 | NC_001900.1 | + | 34497 | 0.66 | 0.708346 |
Target: 5'- cGGUGAGCCCaACGAGguCGuCUgcaCCAACc -3' miRNA: 3'- -UCGCUCGGGgUGCUU--GC-GAaa-GGUUG- -5' |
|||||||
7332 | 3' | -54.6 | NC_001900.1 | + | 5324 | 0.66 | 0.708346 |
Target: 5'- cGCGAGaCCCguugCGCGAGCGaggaUUUCGGCa -3' miRNA: 3'- uCGCUC-GGG----GUGCUUGCga--AAGGUUG- -5' |
|||||||
7332 | 3' | -54.6 | NC_001900.1 | + | 40547 | 0.66 | 0.697334 |
Target: 5'- -cUGGGCCUCACGcaugcaguGGCGCgugCCGACu -3' miRNA: 3'- ucGCUCGGGGUGC--------UUGCGaaaGGUUG- -5' |
|||||||
7332 | 3' | -54.6 | NC_001900.1 | + | 18033 | 0.66 | 0.697334 |
Target: 5'- gAGCGAGCUgUGCGAuCGCggggaUCAGCg -3' miRNA: 3'- -UCGCUCGGgGUGCUuGCGaaa--GGUUG- -5' |
|||||||
7332 | 3' | -54.6 | NC_001900.1 | + | 20040 | 0.66 | 0.686256 |
Target: 5'- gAGUG-GCCUgACGAGCGUUgcCCAGg -3' miRNA: 3'- -UCGCuCGGGgUGCUUGCGAaaGGUUg -5' |
|||||||
7332 | 3' | -54.6 | NC_001900.1 | + | 8915 | 0.67 | 0.66395 |
Target: 5'- uGUGAGCgCCugGAggACGCggUCCu-- -3' miRNA: 3'- uCGCUCGgGGugCU--UGCGaaAGGuug -5' |
|||||||
7332 | 3' | -54.6 | NC_001900.1 | + | 41960 | 0.67 | 0.66395 |
Target: 5'- gAGCGAGUCCgGgcCGAA-GCcgUCCGACu -3' miRNA: 3'- -UCGCUCGGGgU--GCUUgCGaaAGGUUG- -5' |
|||||||
7332 | 3' | -54.6 | NC_001900.1 | + | 12445 | 0.67 | 0.652744 |
Target: 5'- uGGCGAccGCCuUCGCGAugGCg-UUCGACg -3' miRNA: 3'- -UCGCU--CGG-GGUGCUugCGaaAGGUUG- -5' |
|||||||
7332 | 3' | -54.6 | NC_001900.1 | + | 1097 | 0.67 | 0.641519 |
Target: 5'- cGGCGGuGCCCCugGAacccgaggACGCaa--CAGCa -3' miRNA: 3'- -UCGCU-CGGGGugCU--------UGCGaaagGUUG- -5' |
|||||||
7332 | 3' | -54.6 | NC_001900.1 | + | 9761 | 0.7 | 0.477355 |
Target: 5'- uAGCGAcCCCCACGGgcucgGCGCggUCCc-- -3' miRNA: 3'- -UCGCUcGGGGUGCU-----UGCGaaAGGuug -5' |
|||||||
7332 | 3' | -54.6 | NC_001900.1 | + | 5850 | 0.71 | 0.427055 |
Target: 5'- cGCGAGaUCCACgGGGCGCUgUUCAACa -3' miRNA: 3'- uCGCUCgGGGUG-CUUGCGAaAGGUUG- -5' |
|||||||
7332 | 3' | -54.6 | NC_001900.1 | + | 8704 | 0.71 | 0.427055 |
Target: 5'- cGGCGAaguGCCCCGCGAguucguggACGCUgcagugcaUUCCGc- -3' miRNA: 3'- -UCGCU---CGGGGUGCU--------UGCGA--------AAGGUug -5' |
|||||||
7332 | 3' | -54.6 | NC_001900.1 | + | 38444 | 0.71 | 0.407831 |
Target: 5'- -cUGAGCCCCugGAACGCcgaCCGu- -3' miRNA: 3'- ucGCUCGGGGugCUUGCGaaaGGUug -5' |
|||||||
7332 | 3' | -54.6 | NC_001900.1 | + | 29328 | 1.1 | 0.000833 |
Target: 5'- gAGCGAGCCCCACGAACGCUUUCCAACu -3' miRNA: 3'- -UCGCUCGGGGUGCUUGCGAAAGGUUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home