miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7332 3' -54.6 NC_001900.1 + 40741 0.66 0.719281
Target:  5'- cAGCGAugucgucaGCgCCGCGAGCGCcg-CCGu- -3'
miRNA:   3'- -UCGCU--------CGgGGUGCUUGCGaaaGGUug -5'
7332 3' -54.6 NC_001900.1 + 32686 0.66 0.719281
Target:  5'- cAGCGAaCUCCGCGAGuuCGUcugCCGACg -3'
miRNA:   3'- -UCGCUcGGGGUGCUU--GCGaaaGGUUG- -5'
7332 3' -54.6 NC_001900.1 + 22503 0.66 0.719281
Target:  5'- -uCGAGCgCCGCGAACGCaucgCUggUg -3'
miRNA:   3'- ucGCUCGgGGUGCUUGCGaaa-GGuuG- -5'
7332 3' -54.6 NC_001900.1 + 18771 0.66 0.719281
Target:  5'- cAGCGGGCgaugaCCCGCucguGAAgGCggcUUCCGGCu -3'
miRNA:   3'- -UCGCUCG-----GGGUG----CUUgCGa--AAGGUUG- -5'
7332 3' -54.6 NC_001900.1 + 5324 0.66 0.708346
Target:  5'- cGCGAGaCCCguugCGCGAGCGaggaUUUCGGCa -3'
miRNA:   3'- uCGCUC-GGG----GUGCUUGCga--AAGGUUG- -5'
7332 3' -54.6 NC_001900.1 + 10714 0.66 0.708346
Target:  5'- cGGCGAGCCCCGCa---GUgaUCaCGGCc -3'
miRNA:   3'- -UCGCUCGGGGUGcuugCGaaAG-GUUG- -5'
7332 3' -54.6 NC_001900.1 + 34497 0.66 0.708346
Target:  5'- cGGUGAGCCCaACGAGguCGuCUgcaCCAACc -3'
miRNA:   3'- -UCGCUCGGGgUGCUU--GC-GAaa-GGUUG- -5'
7332 3' -54.6 NC_001900.1 + 13262 0.66 0.708346
Target:  5'- uGCGAgGCuUCCGaGGACGC-UUCCAACc -3'
miRNA:   3'- uCGCU-CG-GGGUgCUUGCGaAAGGUUG- -5'
7332 3' -54.6 NC_001900.1 + 40547 0.66 0.697334
Target:  5'- -cUGGGCCUCACGcaugcaguGGCGCgugCCGACu -3'
miRNA:   3'- ucGCUCGGGGUGC--------UUGCGaaaGGUUG- -5'
7332 3' -54.6 NC_001900.1 + 18033 0.66 0.697334
Target:  5'- gAGCGAGCUgUGCGAuCGCggggaUCAGCg -3'
miRNA:   3'- -UCGCUCGGgGUGCUuGCGaaa--GGUUG- -5'
7332 3' -54.6 NC_001900.1 + 20040 0.66 0.686256
Target:  5'- gAGUG-GCCUgACGAGCGUUgcCCAGg -3'
miRNA:   3'- -UCGCuCGGGgUGCUUGCGAaaGGUUg -5'
7332 3' -54.6 NC_001900.1 + 8915 0.67 0.66395
Target:  5'- uGUGAGCgCCugGAggACGCggUCCu-- -3'
miRNA:   3'- uCGCUCGgGGugCU--UGCGaaAGGuug -5'
7332 3' -54.6 NC_001900.1 + 41960 0.67 0.66395
Target:  5'- gAGCGAGUCCgGgcCGAA-GCcgUCCGACu -3'
miRNA:   3'- -UCGCUCGGGgU--GCUUgCGaaAGGUUG- -5'
7332 3' -54.6 NC_001900.1 + 12445 0.67 0.652744
Target:  5'- uGGCGAccGCCuUCGCGAugGCg-UUCGACg -3'
miRNA:   3'- -UCGCU--CGG-GGUGCUugCGaaAGGUUG- -5'
7332 3' -54.6 NC_001900.1 + 1097 0.67 0.641519
Target:  5'- cGGCGGuGCCCCugGAacccgaggACGCaa--CAGCa -3'
miRNA:   3'- -UCGCU-CGGGGugCU--------UGCGaaagGUUG- -5'
7332 3' -54.6 NC_001900.1 + 9761 0.7 0.477355
Target:  5'- uAGCGAcCCCCACGGgcucgGCGCggUCCc-- -3'
miRNA:   3'- -UCGCUcGGGGUGCU-----UGCGaaAGGuug -5'
7332 3' -54.6 NC_001900.1 + 8704 0.71 0.427055
Target:  5'- cGGCGAaguGCCCCGCGAguucguggACGCUgcagugcaUUCCGc- -3'
miRNA:   3'- -UCGCU---CGGGGUGCU--------UGCGA--------AAGGUug -5'
7332 3' -54.6 NC_001900.1 + 5850 0.71 0.427055
Target:  5'- cGCGAGaUCCACgGGGCGCUgUUCAACa -3'
miRNA:   3'- uCGCUCgGGGUG-CUUGCGAaAGGUUG- -5'
7332 3' -54.6 NC_001900.1 + 38444 0.71 0.407831
Target:  5'- -cUGAGCCCCugGAACGCcgaCCGu- -3'
miRNA:   3'- ucGCUCGGGGugCUUGCGaaaGGUug -5'
7332 3' -54.6 NC_001900.1 + 29328 1.1 0.000833
Target:  5'- gAGCGAGCCCCACGAACGCUUUCCAACu -3'
miRNA:   3'- -UCGCUCGGGGUGCUUGCGAAAGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.