miRNA display CGI


Results 1 - 7 of 7 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7333 3' -54.8 NC_001900.1 + 45228 0.66 0.759911
Target:  5'- uGGUCgaGCGUCaCGGGugGcUGGAagcaUGGAa -3'
miRNA:   3'- -CCAG--UGUAGgGCUCugC-ACCUg---ACCU- -5'
7333 3' -54.8 NC_001900.1 + 32666 0.66 0.748563
Target:  5'- --cCACAUCCUc-GACGUGGgccaugagucgguGCUGGAg -3'
miRNA:   3'- ccaGUGUAGGGcuCUGCACC-------------UGACCU- -5'
7333 3' -54.8 NC_001900.1 + 43322 0.67 0.696485
Target:  5'- aGGUaGCGgaggaCCGAGAC-UGGGCUGGc -3'
miRNA:   3'- -CCAgUGUag---GGCUCUGcACCUGACCu -5'
7333 3' -54.8 NC_001900.1 + 5083 0.67 0.696485
Target:  5'- aGGUCucGCAa--CGAGGCGUcGACUGGGa -3'
miRNA:   3'- -CCAG--UGUaggGCUCUGCAcCUGACCU- -5'
7333 3' -54.8 NC_001900.1 + 15085 0.67 0.663777
Target:  5'- uGUC-CGaCCCGucGACcUGGACUGGAg -3'
miRNA:   3'- cCAGuGUaGGGCu-CUGcACCUGACCU- -5'
7333 3' -54.8 NC_001900.1 + 19989 0.7 0.500331
Target:  5'- uGGUUACccuucggcUCCCGAGGcCGUGGucgcgcuGCUGGGg -3'
miRNA:   3'- -CCAGUGu-------AGGGCUCU-GCACC-------UGACCU- -5'
7333 3' -54.8 NC_001900.1 + 29528 1.11 0.000806
Target:  5'- aGGUCACAUCCCGAGACGUGGACUGGAu -3'
miRNA:   3'- -CCAGUGUAGGGCUCUGCACCUGACCU- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.