miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7333 5' -58.3 NC_001900.1 + 40423 0.66 0.553767
Target:  5'- uCGCCGAGcACGgguUCCGAGucaucgcacucgacGCGG-CCAa -3'
miRNA:   3'- -GCGGCUCaUGC---AGGCUCu-------------CGCCaGGU- -5'
7333 5' -58.3 NC_001900.1 + 21403 0.66 0.539071
Target:  5'- gCGCCGAacACGUCgGAguaGAGCgGGUUCAg -3'
miRNA:   3'- -GCGGCUcaUGCAGgCU---CUCG-CCAGGU- -5'
7333 5' -58.3 NC_001900.1 + 8597 0.66 0.528656
Target:  5'- uGUCGAGguacuUGUCCGGGucggcgaagcAGCGGUuCCAc -3'
miRNA:   3'- gCGGCUCau---GCAGGCUC----------UCGCCA-GGU- -5'
7333 5' -58.3 NC_001900.1 + 1186 0.66 0.518316
Target:  5'- cCGCCGGaaGCGgCCG-GGGCGGUUUAg -3'
miRNA:   3'- -GCGGCUcaUGCaGGCuCUCGCCAGGU- -5'
7333 5' -58.3 NC_001900.1 + 15141 0.67 0.512151
Target:  5'- aGCCGAGgcACGcuccccgaguucggcUUCGAGGGCGGcgauUCCGa -3'
miRNA:   3'- gCGGCUCa-UGC---------------AGGCUCUCGCC----AGGU- -5'
7333 5' -58.3 NC_001900.1 + 18162 0.67 0.508057
Target:  5'- uCGCCGAGUGgGUCgGcuccUGGUCCAg -3'
miRNA:   3'- -GCGGCUCAUgCAGgCucucGCCAGGU- -5'
7333 5' -58.3 NC_001900.1 + 14361 0.67 0.497885
Target:  5'- gGCCaGGUugGUUCGAGcacGGCGGgugacgCCGu -3'
miRNA:   3'- gCGGcUCAugCAGGCUC---UCGCCa-----GGU- -5'
7333 5' -58.3 NC_001900.1 + 26378 0.67 0.487805
Target:  5'- aCGCCGAagcGUggcucGCGUCUGAGAaGCGG-CUg -3'
miRNA:   3'- -GCGGCU---CA-----UGCAGGCUCU-CGCCaGGu -5'
7333 5' -58.3 NC_001900.1 + 38838 0.68 0.411016
Target:  5'- cCGCCGAGUAU-UUgGAGAgucGCGGUCUu -3'
miRNA:   3'- -GCGGCUCAUGcAGgCUCU---CGCCAGGu -5'
7333 5' -58.3 NC_001900.1 + 5734 0.68 0.401953
Target:  5'- uCGCUGAGUGCGuugaugUCUGGGcGCucgacGGUCCAg -3'
miRNA:   3'- -GCGGCUCAUGC------AGGCUCuCG-----CCAGGU- -5'
7333 5' -58.3 NC_001900.1 + 36492 0.69 0.38421
Target:  5'- gGCCGuGaucUACGUCCGcaAGCaGGUCCAc -3'
miRNA:   3'- gCGGCuC---AUGCAGGCucUCG-CCAGGU- -5'
7333 5' -58.3 NC_001900.1 + 9885 0.73 0.197445
Target:  5'- uGCCGuacAgGUCCGAGAGCcgGGUCCGg -3'
miRNA:   3'- gCGGCucaUgCAGGCUCUCG--CCAGGU- -5'
7333 5' -58.3 NC_001900.1 + 10661 0.79 0.087342
Target:  5'- uCGCCGGGUACGUCC---AGCGGUUCGc -3'
miRNA:   3'- -GCGGCUCAUGCAGGcucUCGCCAGGU- -5'
7333 5' -58.3 NC_001900.1 + 29567 1.08 0.000612
Target:  5'- gCGCCGAGUACGUCCGAGAGCGGUCCAc -3'
miRNA:   3'- -GCGGCUCAUGCAGGCUCUCGCCAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.