miRNA display CGI


Results 1 - 13 of 13 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7334 3' -59.5 NC_001900.1 + 3144 0.66 0.512674
Target:  5'- aCGAC-CuucCCG-CCGGUCGGGuCgGCGGGu -3'
miRNA:   3'- -GCUGcGu--GGCaGGUCAGCCU-G-CGCCC- -5'
7334 3' -59.5 NC_001900.1 + 15182 0.66 0.51167
Target:  5'- cCGACGCucgaccaGCCGguggcUCCAGUCcaGGuCGaCGGGu -3'
miRNA:   3'- -GCUGCG-------UGGC-----AGGUCAG--CCuGC-GCCC- -5'
7334 3' -59.5 NC_001900.1 + 37725 0.66 0.508662
Target:  5'- cCGACGUACCGaaggacgugaagaCCGugCGGAgCGCGGGc -3'
miRNA:   3'- -GCUGCGUGGCa------------GGUcaGCCU-GCGCCC- -5'
7334 3' -59.5 NC_001900.1 + 44413 0.66 0.491763
Target:  5'- uGGCGUACCGUCCGGggucacccagaucUCcuGGC-CGGGa -3'
miRNA:   3'- gCUGCGUGGCAGGUC-------------AGc-CUGcGCCC- -5'
7334 3' -59.5 NC_001900.1 + 8691 0.67 0.482921
Target:  5'- cCGACcagaGCCGUCCAGUCguuGGACuuGGa -3'
miRNA:   3'- -GCUGcg--UGGCAGGUCAG---CCUGcgCCc -5'
7334 3' -59.5 NC_001900.1 + 27067 0.68 0.422448
Target:  5'- gGGCGCuGCUGaUCCucucgucgcugauGUCGGuCGCGGGc -3'
miRNA:   3'- gCUGCG-UGGC-AGGu------------CAGCCuGCGCCC- -5'
7334 3' -59.5 NC_001900.1 + 21406 0.68 0.390493
Target:  5'- -aACGCGCCGaaCAcGUCGGAguagaGCGGGu -3'
miRNA:   3'- gcUGCGUGGCagGU-CAGCCUg----CGCCC- -5'
7334 3' -59.5 NC_001900.1 + 46408 0.69 0.373436
Target:  5'- uGGCGCGgcaacCCGUCCGcGUgGGACGaCGaGGu -3'
miRNA:   3'- gCUGCGU-----GGCAGGU-CAgCCUGC-GC-CC- -5'
7334 3' -59.5 NC_001900.1 + 8241 0.69 0.365099
Target:  5'- uCGGCG-ACCGUCuCGGUgccgGGAUGUGGGc -3'
miRNA:   3'- -GCUGCgUGGCAG-GUCAg---CCUGCGCCC- -5'
7334 3' -59.5 NC_001900.1 + 34905 0.71 0.282063
Target:  5'- gCGACcCGCCG-CC---CGGACGCGGGa -3'
miRNA:   3'- -GCUGcGUGGCaGGucaGCCUGCGCCC- -5'
7334 3' -59.5 NC_001900.1 + 22744 0.71 0.275305
Target:  5'- uGAuCGCGuuGUCgAGUCGGACagGCGGc -3'
miRNA:   3'- gCU-GCGUggCAGgUCAGCCUG--CGCCc -5'
7334 3' -59.5 NC_001900.1 + 43555 0.76 0.117481
Target:  5'- gCGGCGCACCGagcuggCCGGcCGauccauGACGCGGGg -3'
miRNA:   3'- -GCUGCGUGGCa-----GGUCaGC------CUGCGCCC- -5'
7334 3' -59.5 NC_001900.1 + 29990 1.09 0.000452
Target:  5'- cCGACGCACCGUCCAGUCGGACGCGGGc -3'
miRNA:   3'- -GCUGCGUGGCAGGUCAGCCUGCGCCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.