Results 21 - 28 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 7337 | 3' | -54.1 | NC_001900.1 | + | 1702 | 0.71 | 0.450299 |
|
Target: 5'- --aGAGCGCgcUgACCGggGGUgUCGCCa -3' miRNA: 3'- cugCUUGCGa-AgUGGCuuCCA-GGCGG- -5' |
|||||||
| 7337 | 3' | -54.1 | NC_001900.1 | + | 11615 | 0.72 | 0.434588 |
|
Target: 5'- cGACGAGgcauacgucaaggaGCUUCGCCaGGAGG-CCGCUg -3' miRNA: 3'- -CUGCUUg-------------CGAAGUGG-CUUCCaGGCGG- -5' |
|||||||
| 7337 | 3' | -54.1 | NC_001900.1 | + | 26385 | 0.72 | 0.421105 |
|
Target: 5'- uGACGuacGACGCUUgCACuCGAccgcugcgcuGGGUCCGCa -3' miRNA: 3'- -CUGC---UUGCGAA-GUG-GCU----------UCCAGGCGg -5' |
|||||||
| 7337 | 3' | -54.1 | NC_001900.1 | + | 3310 | 0.72 | 0.402289 |
|
Target: 5'- -uCGAACGggUUGCCG-AGGUCgGCCa -3' miRNA: 3'- cuGCUUGCgaAGUGGCuUCCAGgCGG- -5' |
|||||||
| 7337 | 3' | -54.1 | NC_001900.1 | + | 46569 | 0.76 | 0.23909 |
|
Target: 5'- uGGCGAugGCUuggugggcagccUCACgGAAGGUCaGCCc -3' miRNA: 3'- -CUGCUugCGA------------AGUGgCUUCCAGgCGG- -5' |
|||||||
| 7337 | 3' | -54.1 | NC_001900.1 | + | 47681 | 0.78 | 0.193202 |
|
Target: 5'- --aGAACGCU---CCGAAGGUUCGCCa -3' miRNA: 3'- cugCUUGCGAaguGGCUUCCAGGCGG- -5' |
|||||||
| 7337 | 3' | -54.1 | NC_001900.1 | + | 22815 | 0.82 | 0.098886 |
|
Target: 5'- cAUGGACGCgcUCAgCGAAGGUCCGCUg -3' miRNA: 3'- cUGCUUGCGa-AGUgGCUUCCAGGCGG- -5' |
|||||||
| 7337 | 3' | -54.1 | NC_001900.1 | + | 31650 | 1.12 | 0.000862 |
|
Target: 5'- uGACGAACGCUUCACCGAAGGUCCGCCu -3' miRNA: 3'- -CUGCUUGCGAAGUGGCUUCCAGGCGG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home