Results 1 - 20 of 21 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7337 | 5' | -55.7 | NC_001900.1 | + | 17975 | 0.66 | 0.657739 |
Target: 5'- -cAGCUcGCUCCGUcgcugguucAGAUCguccaGGCGUUCa -3' miRNA: 3'- gcUCGAcUGAGGCG---------UCUAG-----CCGCAAG- -5' |
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7337 | 5' | -55.7 | NC_001900.1 | + | 572 | 0.66 | 0.64668 |
Target: 5'- -aGGUUGuCggCCGCAGAUCGGgGaUCu -3' miRNA: 3'- gcUCGACuGa-GGCGUCUAGCCgCaAG- -5' |
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7337 | 5' | -55.7 | NC_001900.1 | + | 23667 | 0.66 | 0.64668 |
Target: 5'- aGAGgcuCUGACcacUUCGuCGGcUCGGCGUUCa -3' miRNA: 3'- gCUC---GACUG---AGGC-GUCuAGCCGCAAG- -5' |
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7337 | 5' | -55.7 | NC_001900.1 | + | 23174 | 0.66 | 0.64668 |
Target: 5'- uGAGCcGGCcgaGCAGAUCGGUGa-- -3' miRNA: 3'- gCUCGaCUGaggCGUCUAGCCGCaag -5' |
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7337 | 5' | -55.7 | NC_001900.1 | + | 19919 | 0.66 | 0.635609 |
Target: 5'- gGAGCUGaucuGCUCCucGCGucGGUCGGUGUc- -3' miRNA: 3'- gCUCGAC----UGAGG--CGU--CUAGCCGCAag -5' |
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7337 | 5' | -55.7 | NC_001900.1 | + | 14770 | 0.66 | 0.624534 |
Target: 5'- gCGAGUgcaGCUUCGgGGcGUUGGCGUUCc -3' miRNA: 3'- -GCUCGac-UGAGGCgUC-UAGCCGCAAG- -5' |
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7337 | 5' | -55.7 | NC_001900.1 | + | 35114 | 0.67 | 0.613465 |
Target: 5'- uCGAGCcgcuacGACUCUGacuGGGUCGauGCGUUCg -3' miRNA: 3'- -GCUCGa-----CUGAGGCg--UCUAGC--CGCAAG- -5' |
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7337 | 5' | -55.7 | NC_001900.1 | + | 39766 | 0.67 | 0.580397 |
Target: 5'- uGAGUggaagccgucGACUCCGUAGAaggaGGCGUUg -3' miRNA: 3'- gCUCGa---------CUGAGGCGUCUag--CCGCAAg -5' |
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7337 | 5' | -55.7 | NC_001900.1 | + | 16863 | 0.68 | 0.557467 |
Target: 5'- gGAuCUGAC-CCGCacagcguGGAUCGGCGUc- -3' miRNA: 3'- gCUcGACUGaGGCG-------UCUAGCCGCAag -5' |
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7337 | 5' | -55.7 | NC_001900.1 | + | 1260 | 0.68 | 0.547717 |
Target: 5'- gGAGCUGGCg--GCGGGUuCGGUGgUUCg -3' miRNA: 3'- gCUCGACUGaggCGUCUA-GCCGC-AAG- -5' |
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7337 | 5' | -55.7 | NC_001900.1 | + | 24505 | 0.68 | 0.515639 |
Target: 5'- cCGGuGCUGACUCCGgucacggcGGUCGGCGc-- -3' miRNA: 3'- -GCU-CGACUGAGGCgu------CUAGCCGCaag -5' |
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7337 | 5' | -55.7 | NC_001900.1 | + | 10603 | 0.69 | 0.463997 |
Target: 5'- uGAGCUGuGCgggaucCCGaCGG-UCGGCGUUCc -3' miRNA: 3'- gCUCGAC-UGa-----GGC-GUCuAGCCGCAAG- -5' |
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7337 | 5' | -55.7 | NC_001900.1 | + | 36695 | 0.7 | 0.43434 |
Target: 5'- gGAGCUGAUccgCCGC-GAcCGuGCGUUCu -3' miRNA: 3'- gCUCGACUGa--GGCGuCUaGC-CGCAAG- -5' |
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7337 | 5' | -55.7 | NC_001900.1 | + | 15334 | 0.7 | 0.396566 |
Target: 5'- aCGAGCUGACgCUGCAccagcuccUGGCGUUCc -3' miRNA: 3'- -GCUCGACUGaGGCGUcua-----GCCGCAAG- -5' |
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7337 | 5' | -55.7 | NC_001900.1 | + | 41230 | 0.71 | 0.378489 |
Target: 5'- gCGGGUUGGCcUUGCGGGgcaUGGCGUUCg -3' miRNA: 3'- -GCUCGACUGaGGCGUCUa--GCCGCAAG- -5' |
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7337 | 5' | -55.7 | NC_001900.1 | + | 38534 | 0.71 | 0.360973 |
Target: 5'- gGAGcCUGGgaCCGuCGGGUCGGCGUc- -3' miRNA: 3'- gCUC-GACUgaGGC-GUCUAGCCGCAag -5' |
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7337 | 5' | -55.7 | NC_001900.1 | + | 33595 | 0.72 | 0.317344 |
Target: 5'- gGAGCccuUGAucagcccagagaacCUCUGCAGAUCGGCGg-- -3' miRNA: 3'- gCUCG---ACU--------------GAGGCGUCUAGCCGCaag -5' |
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7337 | 5' | -55.7 | NC_001900.1 | + | 6772 | 0.74 | 0.25457 |
Target: 5'- cCGAGCUGAUcCUGCAGAUCGaGCu--- -3' miRNA: 3'- -GCUCGACUGaGGCGUCUAGC-CGcaag -5' |
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7337 | 5' | -55.7 | NC_001900.1 | + | 22579 | 0.74 | 0.241662 |
Target: 5'- gGAGCUGACggCGCauucgAGAUCGGCGg-- -3' miRNA: 3'- gCUCGACUGagGCG-----UCUAGCCGCaag -5' |
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7337 | 5' | -55.7 | NC_001900.1 | + | 8559 | 0.75 | 0.217484 |
Target: 5'- uCGAGCUGGCUCCGCuGGAcCGGgGc-- -3' miRNA: 3'- -GCUCGACUGAGGCG-UCUaGCCgCaag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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