miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7337 5' -55.7 NC_001900.1 + 17975 0.66 0.657739
Target:  5'- -cAGCUcGCUCCGUcgcugguucAGAUCguccaGGCGUUCa -3'
miRNA:   3'- gcUCGAcUGAGGCG---------UCUAG-----CCGCAAG- -5'
7337 5' -55.7 NC_001900.1 + 572 0.66 0.64668
Target:  5'- -aGGUUGuCggCCGCAGAUCGGgGaUCu -3'
miRNA:   3'- gcUCGACuGa-GGCGUCUAGCCgCaAG- -5'
7337 5' -55.7 NC_001900.1 + 23667 0.66 0.64668
Target:  5'- aGAGgcuCUGACcacUUCGuCGGcUCGGCGUUCa -3'
miRNA:   3'- gCUC---GACUG---AGGC-GUCuAGCCGCAAG- -5'
7337 5' -55.7 NC_001900.1 + 23174 0.66 0.64668
Target:  5'- uGAGCcGGCcgaGCAGAUCGGUGa-- -3'
miRNA:   3'- gCUCGaCUGaggCGUCUAGCCGCaag -5'
7337 5' -55.7 NC_001900.1 + 19919 0.66 0.635609
Target:  5'- gGAGCUGaucuGCUCCucGCGucGGUCGGUGUc- -3'
miRNA:   3'- gCUCGAC----UGAGG--CGU--CUAGCCGCAag -5'
7337 5' -55.7 NC_001900.1 + 14770 0.66 0.624534
Target:  5'- gCGAGUgcaGCUUCGgGGcGUUGGCGUUCc -3'
miRNA:   3'- -GCUCGac-UGAGGCgUC-UAGCCGCAAG- -5'
7337 5' -55.7 NC_001900.1 + 35114 0.67 0.613465
Target:  5'- uCGAGCcgcuacGACUCUGacuGGGUCGauGCGUUCg -3'
miRNA:   3'- -GCUCGa-----CUGAGGCg--UCUAGC--CGCAAG- -5'
7337 5' -55.7 NC_001900.1 + 39766 0.67 0.580397
Target:  5'- uGAGUggaagccgucGACUCCGUAGAaggaGGCGUUg -3'
miRNA:   3'- gCUCGa---------CUGAGGCGUCUag--CCGCAAg -5'
7337 5' -55.7 NC_001900.1 + 16863 0.68 0.557467
Target:  5'- gGAuCUGAC-CCGCacagcguGGAUCGGCGUc- -3'
miRNA:   3'- gCUcGACUGaGGCG-------UCUAGCCGCAag -5'
7337 5' -55.7 NC_001900.1 + 1260 0.68 0.547717
Target:  5'- gGAGCUGGCg--GCGGGUuCGGUGgUUCg -3'
miRNA:   3'- gCUCGACUGaggCGUCUA-GCCGC-AAG- -5'
7337 5' -55.7 NC_001900.1 + 24505 0.68 0.515639
Target:  5'- cCGGuGCUGACUCCGgucacggcGGUCGGCGc-- -3'
miRNA:   3'- -GCU-CGACUGAGGCgu------CUAGCCGCaag -5'
7337 5' -55.7 NC_001900.1 + 10603 0.69 0.463997
Target:  5'- uGAGCUGuGCgggaucCCGaCGG-UCGGCGUUCc -3'
miRNA:   3'- gCUCGAC-UGa-----GGC-GUCuAGCCGCAAG- -5'
7337 5' -55.7 NC_001900.1 + 36695 0.7 0.43434
Target:  5'- gGAGCUGAUccgCCGC-GAcCGuGCGUUCu -3'
miRNA:   3'- gCUCGACUGa--GGCGuCUaGC-CGCAAG- -5'
7337 5' -55.7 NC_001900.1 + 15334 0.7 0.396566
Target:  5'- aCGAGCUGACgCUGCAccagcuccUGGCGUUCc -3'
miRNA:   3'- -GCUCGACUGaGGCGUcua-----GCCGCAAG- -5'
7337 5' -55.7 NC_001900.1 + 41230 0.71 0.378489
Target:  5'- gCGGGUUGGCcUUGCGGGgcaUGGCGUUCg -3'
miRNA:   3'- -GCUCGACUGaGGCGUCUa--GCCGCAAG- -5'
7337 5' -55.7 NC_001900.1 + 38534 0.71 0.360973
Target:  5'- gGAGcCUGGgaCCGuCGGGUCGGCGUc- -3'
miRNA:   3'- gCUC-GACUgaGGC-GUCUAGCCGCAag -5'
7337 5' -55.7 NC_001900.1 + 33595 0.72 0.317344
Target:  5'- gGAGCccuUGAucagcccagagaacCUCUGCAGAUCGGCGg-- -3'
miRNA:   3'- gCUCG---ACU--------------GAGGCGUCUAGCCGCaag -5'
7337 5' -55.7 NC_001900.1 + 6772 0.74 0.25457
Target:  5'- cCGAGCUGAUcCUGCAGAUCGaGCu--- -3'
miRNA:   3'- -GCUCGACUGaGGCGUCUAGC-CGcaag -5'
7337 5' -55.7 NC_001900.1 + 22579 0.74 0.241662
Target:  5'- gGAGCUGACggCGCauucgAGAUCGGCGg-- -3'
miRNA:   3'- gCUCGACUGagGCG-----UCUAGCCGCaag -5'
7337 5' -55.7 NC_001900.1 + 8559 0.75 0.217484
Target:  5'- uCGAGCUGGCUCCGCuGGAcCGGgGc-- -3'
miRNA:   3'- -GCUCGACUGAGGCG-UCUaGCCgCaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.