miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7339 3' -56.2 NC_001900.1 + 29315 0.67 0.634587
Target:  5'- uCCUCGaacgAGuaGUCCGGGaUGACGa-- -3'
miRNA:   3'- -GGAGCa---UCcgCAGGCCCaGCUGCaac -5'
7339 3' -56.2 NC_001900.1 + 32332 0.67 0.612967
Target:  5'- cCCUU---GGUGUCCuuGUCGACGUUGa -3'
miRNA:   3'- -GGAGcauCCGCAGGccCAGCUGCAAC- -5'
7339 3' -56.2 NC_001900.1 + 45178 0.68 0.538236
Target:  5'- -gUCGUAGGU--CCGGuuccaguagaaGUCGACGUUGa -3'
miRNA:   3'- ggAGCAUCCGcaGGCC-----------CAGCUGCAAC- -5'
7339 3' -56.2 NC_001900.1 + 46676 0.69 0.527783
Target:  5'- --aUGUAGGCGUCCaGGUUGGCc--- -3'
miRNA:   3'- ggaGCAUCCGCAGGcCCAGCUGcaac -5'
7339 3' -56.2 NC_001900.1 + 4934 0.7 0.428341
Target:  5'- aCCUCGgguucAGGCGacucccUCCGGGa-GGCGUUGc -3'
miRNA:   3'- -GGAGCa----UCCGC------AGGCCCagCUGCAAC- -5'
7339 3' -56.2 NC_001900.1 + 12003 0.71 0.400709
Target:  5'- aCCgUGgcGGCGUCCGGGU-GACGc-- -3'
miRNA:   3'- -GGaGCauCCGCAGGCCCAgCUGCaac -5'
7339 3' -56.2 NC_001900.1 + 32425 0.71 0.400709
Target:  5'- gCCUUGgccUGGGCcgcGUUCaGGUCGGCGUUGa -3'
miRNA:   3'- -GGAGC---AUCCG---CAGGcCCAGCUGCAAC- -5'
7339 3' -56.2 NC_001900.1 + 40536 0.75 0.241316
Target:  5'- aUCUUGUcgAGGUacuuGUCCGGGUCGGCGa-- -3'
miRNA:   3'- -GGAGCA--UCCG----CAGGCCCAGCUGCaac -5'
7339 3' -56.2 NC_001900.1 + 33647 1.11 0.000686
Target:  5'- cCCUCGUAGGCGUCCGGGUCGACGUUGg -3'
miRNA:   3'- -GGAGCAUCCGCAGGCCCAGCUGCAAC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.