miRNA display CGI

Results 1 - 10 of 10 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
734	3'	-55.7	AC_000020.1	+	16000	0.66	0.505102
	Target:  5'- gGGCUGGCAaaaaGCCUCCucucaugcGCCCGCa -3' miRNA:   3'- gUUGACUGUaac-CGGGGGuu------CGGGUG- -5'
734	3'	-55.7	AC_000020.1	+	10968	0.66	0.501809
	Target:  5'- aGGCUGACucugcaUGGCCgCCAuuuucaugggguugAGCgCCGCg -3' miRNA:   3'- gUUGACUGua----ACCGGgGGU--------------UCG-GGUG- -5'
734	3'	-55.7	AC_000020.1	+	8305	0.66	0.494163
	Target:  5'- cCGACUGuagaccaccuGCcccucgUGGUCCCU-AGCCCGCa -3' miRNA:   3'- -GUUGAC----------UGua----ACCGGGGGuUCGGGUG- -5'
734	3'	-55.7	AC_000020.1	+	4928	0.66	0.483334
	Target:  5'- uGGCaUGACcuUUGGCCCUgAGcuugcccuuGCCCACg -3' miRNA:   3'- gUUG-ACUGu-AACCGGGGgUU---------CGGGUG- -5'
734	3'	-55.7	AC_000020.1	+	17062	0.66	0.47262
	Target:  5'- -cACUG----UGGCCCCCA--CCCACg -3' miRNA:   3'- guUGACuguaACCGGGGGUucGGGUG- -5'
734	3'	-55.7	AC_000020.1	+	6023	0.66	0.47262
	Target:  5'- ----gGACGUgcuGCCCCCAuuuuGCUCACg -3' miRNA:   3'- guugaCUGUAac-CGGGGGUu---CGGGUG- -5'
734	3'	-55.7	AC_000020.1	+	25751	0.66	0.46943
	Target:  5'- -cGCUGGuauaaaguagacccCAgcGGCUUCCAAGCCCAa -3' miRNA:   3'- guUGACU--------------GUaaCCGGGGGUUCGGGUg -5'
734	3'	-55.7	AC_000020.1	+	15544	0.69	0.311265
	Target:  5'- ---aUGGCAUUggcgGGCCCCCAucuugaaGGCCgACg -3' miRNA:   3'- guugACUGUAA----CCGGGGGU-------UCGGgUG- -5'
734	3'	-55.7	AC_000020.1	+	15546	0.7	0.273451
	Target:  5'- aCGGCUaGGaaaAUgagGGgCCCCAAGCCUACa -3' miRNA:   3'- -GUUGA-CUg--UAa--CCgGGGGUUCGGGUG- -5'
734	3'	-55.7	AC_000020.1	+	25453	1.09	0.000338
	Target:  5'- cCAACUGACAUUGGCCCCCAAGCCCACu -3' miRNA:   3'- -GUUGACUGUAACCGGGGGUUCGGGUG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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