miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
734 3' -55.7 AC_000020.1 + 25453 1.09 0.000338
Target:  5'- cCAACUGACAUUGGCCCCCAAGCCCACu -3'
miRNA:   3'- -GUUGACUGUAACCGGGGGUUCGGGUG- -5'
734 3' -55.7 AC_000020.1 + 15546 0.7 0.273451
Target:  5'- aCGGCUaGGaaaAUgagGGgCCCCAAGCCUACa -3'
miRNA:   3'- -GUUGA-CUg--UAa--CCgGGGGUUCGGGUG- -5'
734 3' -55.7 AC_000020.1 + 15544 0.69 0.311265
Target:  5'- ---aUGGCAUUggcgGGCCCCCAucuugaaGGCCgACg -3'
miRNA:   3'- guugACUGUAA----CCGGGGGU-------UCGGgUG- -5'
734 3' -55.7 AC_000020.1 + 17062 0.66 0.47262
Target:  5'- -cACUG----UGGCCCCCA--CCCACg -3'
miRNA:   3'- guUGACuguaACCGGGGGUucGGGUG- -5'
734 3' -55.7 AC_000020.1 + 4928 0.66 0.483334
Target:  5'- uGGCaUGACcuUUGGCCCUgAGcuugcccuuGCCCACg -3'
miRNA:   3'- gUUG-ACUGu-AACCGGGGgUU---------CGGGUG- -5'
734 3' -55.7 AC_000020.1 + 8305 0.66 0.494163
Target:  5'- cCGACUGuagaccaccuGCcccucgUGGUCCCU-AGCCCGCa -3'
miRNA:   3'- -GUUGAC----------UGua----ACCGGGGGuUCGGGUG- -5'
734 3' -55.7 AC_000020.1 + 25751 0.66 0.46943
Target:  5'- -cGCUGGuauaaaguagacccCAgcGGCUUCCAAGCCCAa -3'
miRNA:   3'- guUGACU--------------GUaaCCGGGGGUUCGGGUg -5'
734 3' -55.7 AC_000020.1 + 10968 0.66 0.501809
Target:  5'- aGGCUGACucugcaUGGCCgCCAuuuucaugggguugAGCgCCGCg -3'
miRNA:   3'- gUUGACUGua----ACCGGgGGU--------------UCG-GGUG- -5'
734 3' -55.7 AC_000020.1 + 6023 0.66 0.47262
Target:  5'- ----gGACGUgcuGCCCCCAuuuuGCUCACg -3'
miRNA:   3'- guugaCUGUAac-CGGGGGUu---CGGGUG- -5'
734 3' -55.7 AC_000020.1 + 16000 0.66 0.505102
Target:  5'- gGGCUGGCAaaaaGCCUCCucucaugcGCCCGCa -3'
miRNA:   3'- gUUGACUGUaac-CGGGGGuu------CGGGUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.