miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7341 5' -57.2 NC_001900.1 + 25608 0.66 0.621371
Target:  5'- uGACCGUcuucu-CGUCGgCCGGGUCc -3'
miRNA:   3'- gCUGGCGacucuuGCAGCgGGCCUAG- -5'
7341 5' -57.2 NC_001900.1 + 48620 0.66 0.621371
Target:  5'- cCGAagGUUGAGAACGUCGaacuucCCCGGu-- -3'
miRNA:   3'- -GCUggCGACUCUUGCAGC------GGGCCuag -5'
7341 5' -57.2 NC_001900.1 + 8347 0.66 0.620285
Target:  5'- uGACCGCUGggcuuggGGGAUG-CGCCaGGAa- -3'
miRNA:   3'- gCUGGCGAC-------UCUUGCaGCGGgCCUag -5'
7341 5' -57.2 NC_001900.1 + 10191 0.66 0.599676
Target:  5'- gGGCCGCaGAGAGC--CGCCU-GAUCa -3'
miRNA:   3'- gCUGGCGaCUCUUGcaGCGGGcCUAG- -5'
7341 5' -57.2 NC_001900.1 + 5683 0.66 0.566287
Target:  5'- gCGACCGCcGcGAccucgaaACGgucaCGCgCCGGAUCa -3'
miRNA:   3'- -GCUGGCGaCuCU-------UGCa---GCG-GGCCUAG- -5'
7341 5' -57.2 NC_001900.1 + 24556 0.67 0.535498
Target:  5'- cCGACCGCcGuGAccggaGUCaGCaCCGGGUCg -3'
miRNA:   3'- -GCUGGCGaCuCUug---CAG-CG-GGCCUAG- -5'
7341 5' -57.2 NC_001900.1 + 31115 0.68 0.483925
Target:  5'- gCGAUCGCgGGGAucaGCGUCuggaacGCUgGGAUCa -3'
miRNA:   3'- -GCUGGCGaCUCU---UGCAG------CGGgCCUAG- -5'
7341 5' -57.2 NC_001900.1 + 15391 0.68 0.473891
Target:  5'- cCGACaaCGCUGuGAgcuucacggccaACGUCGaCCCGGAc- -3'
miRNA:   3'- -GCUG--GCGACuCU------------UGCAGC-GGGCCUag -5'
7341 5' -57.2 NC_001900.1 + 9187 0.69 0.434854
Target:  5'- aGAUCGCUGAuccGGCGaUCGCCCGaGAc- -3'
miRNA:   3'- gCUGGCGACUc--UUGC-AGCGGGC-CUag -5'
7341 5' -57.2 NC_001900.1 + 7371 0.69 0.415119
Target:  5'- aGGCCGCUGAcaacuucGAGauccCGCgCCGGAUCg -3'
miRNA:   3'- gCUGGCGACU-------CUUgca-GCG-GGCCUAG- -5'
7341 5' -57.2 NC_001900.1 + 18259 0.69 0.415118
Target:  5'- aGGCUccugGCUGAucgaggcgggcaaGAACGUCGUCCaGGGUCu -3'
miRNA:   3'- gCUGG----CGACU-------------CUUGCAGCGGG-CCUAG- -5'
7341 5' -57.2 NC_001900.1 + 25142 0.7 0.346043
Target:  5'- aGACCGCUGGGGuCGUUGUCguuGAUCg -3'
miRNA:   3'- gCUGGCGACUCUuGCAGCGGgc-CUAG- -5'
7341 5' -57.2 NC_001900.1 + 32542 0.73 0.238667
Target:  5'- cCGACCgGCUGgccucgauguAGAACGUCGCgCUGGAa- -3'
miRNA:   3'- -GCUGG-CGAC----------UCUUGCAGCG-GGCCUag -5'
7341 5' -57.2 NC_001900.1 + 1375 0.74 0.220856
Target:  5'- aGAUCGCUGcAGAGCGUgaggcUGCCCuGGUCg -3'
miRNA:   3'- gCUGGCGAC-UCUUGCA-----GCGGGcCUAG- -5'
7341 5' -57.2 NC_001900.1 + 2567 0.74 0.215176
Target:  5'- -aGCCGCUGAGGGCGUaGCCCGa--- -3'
miRNA:   3'- gcUGGCGACUCUUGCAgCGGGCcuag -5'
7341 5' -57.2 NC_001900.1 + 34255 1.1 0.000535
Target:  5'- gCGACCGCUGAGAACGUCGCCCGGAUCa -3'
miRNA:   3'- -GCUGGCGACUCUUGCAGCGGGCCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.