miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7342 5' -60 NC_001900.1 + 45684 0.66 0.436021
Target:  5'- gGCCgGCCgGCCucACCACAC-CUuucGCGUGg -3'
miRNA:   3'- gUGG-CGGaCGG--UGGUGUGuGA---CGCGC- -5'
7342 5' -60 NC_001900.1 + 26797 0.66 0.398999
Target:  5'- -cCCGCCUGCUGCaACAgACgagGgGCGg -3'
miRNA:   3'- guGGCGGACGGUGgUGUgUGa--CgCGC- -5'
7342 5' -60 NC_001900.1 + 43616 0.67 0.390063
Target:  5'- gACCGCC-GCCGUCuCAUGCgGCGCGu -3'
miRNA:   3'- gUGGCGGaCGGUGGuGUGUGaCGCGC- -5'
7342 5' -60 NC_001900.1 + 33063 0.67 0.381259
Target:  5'- cCGCCGCCgcuaccGCCGCCACcggaguucgGCuuGCUGcCGCc -3'
miRNA:   3'- -GUGGCGGa-----CGGUGGUG---------UG--UGAC-GCGc -5'
7342 5' -60 NC_001900.1 + 38094 0.67 0.372588
Target:  5'- uCGgCGaCCUGCCAucuccacuUCGCGCACUGuCGCc -3'
miRNA:   3'- -GUgGC-GGACGGU--------GGUGUGUGAC-GCGc -5'
7342 5' -60 NC_001900.1 + 43501 0.67 0.372588
Target:  5'- gCGCCGCCUGCU-CCGCGuccauCGCU-CGCu -3'
miRNA:   3'- -GUGGCGGACGGuGGUGU-----GUGAcGCGc -5'
7342 5' -60 NC_001900.1 + 14337 0.67 0.372588
Target:  5'- gAUCGaCCacGCCAUCGCGCAgUGUGUGg -3'
miRNA:   3'- gUGGC-GGa-CGGUGGUGUGUgACGCGC- -5'
7342 5' -60 NC_001900.1 + 24100 0.67 0.355653
Target:  5'- gCugCGCC-GCCGCCAC-CAg-GUGCGu -3'
miRNA:   3'- -GugGCGGaCGGUGGUGuGUgaCGCGC- -5'
7342 5' -60 NC_001900.1 + 9215 0.68 0.339267
Target:  5'- gACCGCCgUGCU-CCACGgGCUGCa-- -3'
miRNA:   3'- gUGGCGG-ACGGuGGUGUgUGACGcgc -5'
7342 5' -60 NC_001900.1 + 40155 0.68 0.331281
Target:  5'- gACCG-CUGCCGCgACu--CUGUGCGg -3'
miRNA:   3'- gUGGCgGACGGUGgUGuguGACGCGC- -5'
7342 5' -60 NC_001900.1 + 47832 0.68 0.315729
Target:  5'- uGCCGCC-GCCACCGagUACACcaccgGUGCc -3'
miRNA:   3'- gUGGCGGaCGGUGGU--GUGUGa----CGCGc -5'
7342 5' -60 NC_001900.1 + 4025 0.69 0.293444
Target:  5'- gACCGCCUGaCCAUCugGCcguucacgaucgACgGCGUGa -3'
miRNA:   3'- gUGGCGGAC-GGUGGugUG------------UGaCGCGC- -5'
7342 5' -60 NC_001900.1 + 39629 0.69 0.293444
Target:  5'- -uUCGCCUGCCACCACugcCACaGCu-- -3'
miRNA:   3'- guGGCGGACGGUGGUGu--GUGaCGcgc -5'
7342 5' -60 NC_001900.1 + 47929 0.7 0.252597
Target:  5'- aCGCCGCCUGCCccggcuccuuGCCGgGUGCUGuUGCGu -3'
miRNA:   3'- -GUGGCGGACGG----------UGGUgUGUGAC-GCGC- -5'
7342 5' -60 NC_001900.1 + 30287 0.73 0.149271
Target:  5'- aGCCGCCUucacgagcggGUCAUCGCcCGCUGCGCc -3'
miRNA:   3'- gUGGCGGA----------CGGUGGUGuGUGACGCGc -5'
7342 5' -60 NC_001900.1 + 24443 0.73 0.145275
Target:  5'- aGCCGCCUugGCC-CCACGCAgUG-GCGg -3'
miRNA:   3'- gUGGCGGA--CGGuGGUGUGUgACgCGC- -5'
7342 5' -60 NC_001900.1 + 38441 0.73 0.145275
Target:  5'- uCACgGCCUggGCCGCUGCAUACUGCucagGCGu -3'
miRNA:   3'- -GUGgCGGA--CGGUGGUGUGUGACG----CGC- -5'
7342 5' -60 NC_001900.1 + 35899 0.73 0.141377
Target:  5'- aACCGCCaGCCGCgauCAgGCGCUGgGCGu -3'
miRNA:   3'- gUGGCGGaCGGUG---GUgUGUGACgCGC- -5'
7342 5' -60 NC_001900.1 + 47719 0.75 0.110388
Target:  5'- gACCGCCaGCgcguugaaCGCCGCACGCuucUGCGCGg -3'
miRNA:   3'- gUGGCGGaCG--------GUGGUGUGUG---ACGCGC- -5'
7342 5' -60 NC_001900.1 + 24971 0.76 0.085852
Target:  5'- gGCUGCCacgucuUGUCGCCGCGCcaguACUGCGCGa -3'
miRNA:   3'- gUGGCGG------ACGGUGGUGUG----UGACGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.