miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7345 3' -50.9 NC_001900.1 + 46298 0.66 0.914724
Target:  5'- cUGGAGuucgaagccuuCGAGGuCACCGacCUCGUCGu -3'
miRNA:   3'- -ACCUCuu---------GCUCU-GUGGCauGAGUAGC- -5'
7345 3' -50.9 NC_001900.1 + 44227 0.66 0.902594
Target:  5'- cGGAGc-CucGACACCGUAagUCAUCGc -3'
miRNA:   3'- aCCUCuuGcuCUGUGGCAUg-AGUAGC- -5'
7345 3' -50.9 NC_001900.1 + 29021 0.66 0.888029
Target:  5'- cGGGGAcaucgGCGguguAGACGCCGauCUCGUCu -3'
miRNA:   3'- aCCUCU-----UGC----UCUGUGGCauGAGUAGc -5'
7345 3' -50.9 NC_001900.1 + 32884 0.67 0.864117
Target:  5'- cUGGGGuacugcGCGGGGCACU--GCUCGUUGc -3'
miRNA:   3'- -ACCUCu-----UGCUCUGUGGcaUGAGUAGC- -5'
7345 3' -50.9 NC_001900.1 + 26021 0.68 0.828683
Target:  5'- cGGAGuacguuguaGGCGuGcCGCCGUGC-CGUCGg -3'
miRNA:   3'- aCCUC---------UUGCuCuGUGGCAUGaGUAGC- -5'
7345 3' -50.9 NC_001900.1 + 11859 0.68 0.809609
Target:  5'- uUGcAGGGCGAgGACGCCG-ACUCgAUCGc -3'
miRNA:   3'- -ACcUCUUGCU-CUGUGGCaUGAG-UAGC- -5'
7345 3' -50.9 NC_001900.1 + 42844 0.69 0.793775
Target:  5'- gGGAGuGCGuGugGCCGUGCaguaggaucaauccuUCAUCc -3'
miRNA:   3'- aCCUCuUGCuCugUGGCAUG---------------AGUAGc -5'
7345 3' -50.9 NC_001900.1 + 7180 0.7 0.726349
Target:  5'- cGGuGGcCGGGACuCCGUgguagcccaGCUCAUCGa -3'
miRNA:   3'- aCCuCUuGCUCUGuGGCA---------UGAGUAGC- -5'
7345 3' -50.9 NC_001900.1 + 18712 0.73 0.546624
Target:  5'- gGGGGAGCagcaggucuGGGAgGCCGUGCUCcUCa -3'
miRNA:   3'- aCCUCUUG---------CUCUgUGGCAUGAGuAGc -5'
7345 3' -50.9 NC_001900.1 + 13714 0.73 0.546624
Target:  5'- aGGAGAGCGAGAagaucugcuCCG-ACUCAUgCGg -3'
miRNA:   3'- aCCUCUUGCUCUgu-------GGCaUGAGUA-GC- -5'
7345 3' -50.9 NC_001900.1 + 14267 0.76 0.392246
Target:  5'- aGGAgGAGCGAGACggcgucacccGCCGUGCUCGa-- -3'
miRNA:   3'- aCCU-CUUGCUCUG----------UGGCAUGAGUagc -5'
7345 3' -50.9 NC_001900.1 + 35591 1.09 0.00279
Target:  5'- uUGGAGAACGAGACACCGUACUCAUCGc -3'
miRNA:   3'- -ACCUCUUGCUCUGUGGCAUGAGUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.