miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7345 5' -53.4 NC_001900.1 + 23614 0.66 0.812353
Target:  5'- gGCCGGUG-CGACGACcaaggagcugaugguGCgCCU-CggGCa -3'
miRNA:   3'- -CGGCCACuGUUGCUG---------------CG-GGAaGaaCG- -5'
7345 5' -53.4 NC_001900.1 + 30355 0.66 0.80853
Target:  5'- uCUGGUacGCGAgGAUGUCCUUCU-GCg -3'
miRNA:   3'- cGGCCAc-UGUUgCUGCGGGAAGAaCG- -5'
7345 5' -53.4 NC_001900.1 + 19838 0.66 0.79884
Target:  5'- cGUCGGaUGACcuuCGACGCggaCUUCgaGCu -3'
miRNA:   3'- -CGGCC-ACUGuu-GCUGCGg--GAAGaaCG- -5'
7345 5' -53.4 NC_001900.1 + 31923 0.66 0.78897
Target:  5'- uGCCGGUGGCGACGucUGCaagUUCgggGUg -3'
miRNA:   3'- -CGGCCACUGUUGCu-GCGgg-AAGaa-CG- -5'
7345 5' -53.4 NC_001900.1 + 28953 0.66 0.778933
Target:  5'- uCCGGUGGCuucaGuCGCuCCUgcucgcgCUUGCa -3'
miRNA:   3'- cGGCCACUGuug-CuGCG-GGAa------GAACG- -5'
7345 5' -53.4 NC_001900.1 + 21272 0.67 0.758403
Target:  5'- gGUCGGUGGCGcgauCGACcuGCCCccgCUggGCg -3'
miRNA:   3'- -CGGCCACUGUu---GCUG--CGGGaa-GAa-CG- -5'
7345 5' -53.4 NC_001900.1 + 33944 0.67 0.737342
Target:  5'- gGCUGGUGugGcCGACGCUCgaccaGCc -3'
miRNA:   3'- -CGGCCACugUuGCUGCGGGaagaaCG- -5'
7345 5' -53.4 NC_001900.1 + 8632 0.68 0.694009
Target:  5'- -aCGGUaGGCAcCGGCGCCCcgcuggugUUCcUGCa -3'
miRNA:   3'- cgGCCA-CUGUuGCUGCGGG--------AAGaACG- -5'
7345 5' -53.4 NC_001900.1 + 46886 0.68 0.694009
Target:  5'- gGCgGGUGAUcACGugGCCa-UCUcgGCc -3'
miRNA:   3'- -CGgCCACUGuUGCugCGGgaAGAa-CG- -5'
7345 5' -53.4 NC_001900.1 + 29241 0.68 0.694009
Target:  5'- gGUCGGUGuCGAUGAUGCagUUCUcGCc -3'
miRNA:   3'- -CGGCCACuGUUGCUGCGggAAGAaCG- -5'
7345 5' -53.4 NC_001900.1 + 1622 0.68 0.694009
Target:  5'- gGCCGGUGGCGAC-ACcCCCggUCagcGCg -3'
miRNA:   3'- -CGGCCACUGUUGcUGcGGGa-AGaa-CG- -5'
7345 5' -53.4 NC_001900.1 + 27497 0.68 0.682993
Target:  5'- cGUCGGcGAUguAGCGGCGCaCCgUCUUGg -3'
miRNA:   3'- -CGGCCaCUG--UUGCUGCG-GGaAGAACg -5'
7345 5' -53.4 NC_001900.1 + 27657 0.68 0.682993
Target:  5'- gGCCGGUGACGAUGuccucaaGCCCc----GCa -3'
miRNA:   3'- -CGGCCACUGUUGCug-----CGGGaagaaCG- -5'
7345 5' -53.4 NC_001900.1 + 27094 0.68 0.671927
Target:  5'- uGUCGGUcgcgGGCAACGugGCCCa------ -3'
miRNA:   3'- -CGGCCA----CUGUUGCugCGGGaagaacg -5'
7345 5' -53.4 NC_001900.1 + 38022 0.68 0.660823
Target:  5'- cCCGGUGGCGACccucgcccaGCCCUUCa--- -3'
miRNA:   3'- cGGCCACUGUUGcug------CGGGAAGaacg -5'
7345 5' -53.4 NC_001900.1 + 15422 0.69 0.649691
Target:  5'- gGCCGGUGuccgucGCGACGACGCga-UCgaGCu -3'
miRNA:   3'- -CGGCCAC------UGUUGCUGCGggaAGaaCG- -5'
7345 5' -53.4 NC_001900.1 + 41796 0.69 0.616239
Target:  5'- -gCGGUGGCGAUGGCuuUCUUCaugUGCg -3'
miRNA:   3'- cgGCCACUGUUGCUGcgGGAAGa--ACG- -5'
7345 5' -53.4 NC_001900.1 + 27856 0.7 0.582912
Target:  5'- cGUCGGUccuuGACGACGACuGCaCCaacCUUGCu -3'
miRNA:   3'- -CGGCCA----CUGUUGCUG-CG-GGaa-GAACG- -5'
7345 5' -53.4 NC_001900.1 + 23388 0.71 0.506991
Target:  5'- gGCCGGUGACcgUGcCGCCUcacgUCgcgGCg -3'
miRNA:   3'- -CGGCCACUGuuGCuGCGGGa---AGaa-CG- -5'
7345 5' -53.4 NC_001900.1 + 45634 0.73 0.388301
Target:  5'- gGCCaGGccaGCGugGACGUUCUUCUUGCc -3'
miRNA:   3'- -CGG-CCac-UGUugCUGCGGGAAGAACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.