miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7346 3' -55.2 NC_001900.1 + 1252 0.66 0.723284
Target:  5'- gCGGcagCGGAGCUGGCggCGGGUUcgGugGu -3'
miRNA:   3'- -GCUa--GCCUUGGUCGa-GCCCGAa-CugC- -5'
7346 3' -55.2 NC_001900.1 + 32740 0.66 0.723284
Target:  5'- -aGUCGGugccugcCCAGCUCGGGuCUUcGAgGa -3'
miRNA:   3'- gcUAGCCuu-----GGUCGAGCCC-GAA-CUgC- -5'
7346 3' -55.2 NC_001900.1 + 43842 0.66 0.680047
Target:  5'- -cGUCGGGaacgGCCAGCgcgaGGGCUgGGCc -3'
miRNA:   3'- gcUAGCCU----UGGUCGag--CCCGAaCUGc -5'
7346 3' -55.2 NC_001900.1 + 39101 0.67 0.658108
Target:  5'- cCGGucUCGGggUCuacGCcgaucucuUCGGGCUUGAUGc -3'
miRNA:   3'- -GCU--AGCCuuGGu--CG--------AGCCCGAACUGC- -5'
7346 3' -55.2 NC_001900.1 + 33102 0.67 0.614024
Target:  5'- aGcgCGGcGAUCAGCUucuUGGGCUucgUGGCGa -3'
miRNA:   3'- gCuaGCC-UUGGUCGA---GCCCGA---ACUGC- -5'
7346 3' -55.2 NC_001900.1 + 24760 0.67 0.614024
Target:  5'- --uUCGGAcagACCGGCgCGGGCggcaaagggGGCGa -3'
miRNA:   3'- gcuAGCCU---UGGUCGaGCCCGaa-------CUGC- -5'
7346 3' -55.2 NC_001900.1 + 27536 0.69 0.537808
Target:  5'- aGcgUGuGAGCCguucgGGCUCGGGuCUUGugGa -3'
miRNA:   3'- gCuaGC-CUUGG-----UCGAGCCC-GAACugC- -5'
7346 3' -55.2 NC_001900.1 + 35850 0.7 0.465104
Target:  5'- --uUCGGAGCgGGUUUGGGUUUGGUGg -3'
miRNA:   3'- gcuAGCCUUGgUCGAGCCCGAACUGC- -5'
7346 3' -55.2 NC_001900.1 + 43480 0.71 0.407071
Target:  5'- gGAUCGGccGGCCAGCUCGGuGCgccGCc -3'
miRNA:   3'- gCUAGCC--UUGGUCGAGCC-CGaacUGc -5'
7346 3' -55.2 NC_001900.1 + 8575 0.71 0.388759
Target:  5'- gGAcCGGGGCCAGaagaucaccCUCGGGUUcGACGg -3'
miRNA:   3'- gCUaGCCUUGGUC---------GAGCCCGAaCUGC- -5'
7346 3' -55.2 NC_001900.1 + 36801 1.09 0.000964
Target:  5'- aCGAUCGGAACCAGCUCGGGCUUGACGu -3'
miRNA:   3'- -GCUAGCCUUGGUCGAGCCCGAACUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.