miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7346 5' -53.5 NC_001900.1 + 47337 0.66 0.784401
Target:  5'- cACUGg--GCAGACCGAugCUGUUCg- -3'
miRNA:   3'- -UGGCaguUGUCUGGUUugGGCGAGac -5'
7346 5' -53.5 NC_001900.1 + 42064 0.66 0.774181
Target:  5'- cGCCGUCGuuguACGGGCCGgugacgugguggAGCCCGaUCa- -3'
miRNA:   3'- -UGGCAGU----UGUCUGGU------------UUGGGCgAGac -5'
7346 5' -53.5 NC_001900.1 + 27076 0.66 0.77315
Target:  5'- aGCCaGUCGACAuGCCGAaaGCCgcacuuccacaagUGCUCUGa -3'
miRNA:   3'- -UGG-CAGUUGUcUGGUU--UGG-------------GCGAGAC- -5'
7346 5' -53.5 NC_001900.1 + 32464 0.66 0.763806
Target:  5'- -aCGUCGGCcGACagcuCCCGCUCg- -3'
miRNA:   3'- ugGCAGUUGuCUGguuuGGGCGAGac -5'
7346 5' -53.5 NC_001900.1 + 36468 0.66 0.762761
Target:  5'- uGCCGUCGuucaccaGCAGGCUcAGgCCGUUCa- -3'
miRNA:   3'- -UGGCAGU-------UGUCUGGuUUgGGCGAGac -5'
7346 5' -53.5 NC_001900.1 + 10492 0.66 0.753291
Target:  5'- gGCCG-CGAUGGGCCucGGCCUGCUg-- -3'
miRNA:   3'- -UGGCaGUUGUCUGGu-UUGGGCGAgac -5'
7346 5' -53.5 NC_001900.1 + 48750 0.66 0.753291
Target:  5'- cACCGUCGucGCAGGuCCAuAGgCUGCUCa- -3'
miRNA:   3'- -UGGCAGU--UGUCU-GGU-UUgGGCGAGac -5'
7346 5' -53.5 NC_001900.1 + 4259 0.66 0.752231
Target:  5'- cGCCGUgAcGCAGAUCAAGCUuccgcugCGCUCg- -3'
miRNA:   3'- -UGGCAgU-UGUCUGGUUUGG-------GCGAGac -5'
7346 5' -53.5 NC_001900.1 + 35311 0.66 0.742645
Target:  5'- cGCCaGUCGuggacgcaguaGCAGACCGgagGAUCCGCUUcgUGg -3'
miRNA:   3'- -UGG-CAGU-----------UGUCUGGU---UUGGGCGAG--AC- -5'
7346 5' -53.5 NC_001900.1 + 25273 0.66 0.741573
Target:  5'- cCCGUCGuCGGACCAcagggccagucgaGAgCCGUUCUu -3'
miRNA:   3'- uGGCAGUuGUCUGGU-------------UUgGGCGAGAc -5'
7346 5' -53.5 NC_001900.1 + 36215 0.67 0.721014
Target:  5'- cGCCGUCGuCGuACCGAACCCugaucgcCUCUGc -3'
miRNA:   3'- -UGGCAGUuGUcUGGUUUGGGc------GAGAC- -5'
7346 5' -53.5 NC_001900.1 + 17018 0.67 0.721014
Target:  5'- gGCgG-CAGCcgAGACCAugauGCCCGCgCUGg -3'
miRNA:   3'- -UGgCaGUUG--UCUGGUu---UGGGCGaGAC- -5'
7346 5' -53.5 NC_001900.1 + 11741 0.67 0.721013
Target:  5'- cGCC--CAGCGGAUCAAGCCCGaUUCg- -3'
miRNA:   3'- -UGGcaGUUGUCUGGUUUGGGC-GAGac -5'
7346 5' -53.5 NC_001900.1 + 6489 0.67 0.699013
Target:  5'- cGCUGUCAACGGcgcggucccccaGCUcgGCCCGCUg-- -3'
miRNA:   3'- -UGGCAGUUGUC------------UGGuuUGGGCGAgac -5'
7346 5' -53.5 NC_001900.1 + 20718 0.67 0.699012
Target:  5'- cGCUGUCGAcCAGACCGAcggcaGCaaGCUgUGg -3'
miRNA:   3'- -UGGCAGUU-GUCUGGUU-----UGggCGAgAC- -5'
7346 5' -53.5 NC_001900.1 + 40840 0.67 0.699012
Target:  5'- uGCCuguGUCGACGGACUu--CCCGgaCUGc -3'
miRNA:   3'- -UGG---CAGUUGUCUGGuuuGGGCgaGAC- -5'
7346 5' -53.5 NC_001900.1 + 12896 0.68 0.665529
Target:  5'- cACCGUCGAgAGcCCGAACUucgucuCGCUgUGg -3'
miRNA:   3'- -UGGCAGUUgUCuGGUUUGG------GCGAgAC- -5'
7346 5' -53.5 NC_001900.1 + 43783 0.68 0.643023
Target:  5'- gGCCGgCAGCAGugCua--CCGCUCg- -3'
miRNA:   3'- -UGGCaGUUGUCugGuuugGGCGAGac -5'
7346 5' -53.5 NC_001900.1 + 23885 0.68 0.643023
Target:  5'- cAUCGUCGGCAGGCuCGccucguacccGGCCCGagcCUCUGc -3'
miRNA:   3'- -UGGCAGUUGUCUG-GU----------UUGGGC---GAGAC- -5'
7346 5' -53.5 NC_001900.1 + 16366 0.68 0.631749
Target:  5'- aACCGUCAcgucgGCAGA-CGAACUCGCggaguucgCUGg -3'
miRNA:   3'- -UGGCAGU-----UGUCUgGUUUGGGCGa-------GAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.