miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7347 3' -55.3 NC_001900.1 + 20755 0.67 0.65511
Target:  5'- ---aCGCUGACGUGUCGccgguacaucaagGACCGCgacccGCa -3'
miRNA:   3'- acuaGUGGCUGCACGGC-------------UUGGCGa----CG- -5'
7347 3' -55.3 NC_001900.1 + 20217 0.67 0.656212
Target:  5'- cGAg-ACCGGCGUaGCCa---CGCUGCa -3'
miRNA:   3'- aCUagUGGCUGCA-CGGcuugGCGACG- -5'
7347 3' -55.3 NC_001900.1 + 25742 0.67 0.656212
Target:  5'- --cUCGCCGACGcggGCCGcGCCcCgGCg -3'
miRNA:   3'- acuAGUGGCUGCa--CGGCuUGGcGaCG- -5'
7347 3' -55.3 NC_001900.1 + 27894 0.67 0.656212
Target:  5'- --uUCAcaguCCGAUc-GCUGGGCCGCUGCc -3'
miRNA:   3'- acuAGU----GGCUGcaCGGCUUGGCGACG- -5'
7347 3' -55.3 NC_001900.1 + 1353 0.67 0.656212
Target:  5'- gUGGUCAacgucCCGACcu-CCGAgAUCGCUGCa -3'
miRNA:   3'- -ACUAGU-----GGCUGcacGGCU-UGGCGACG- -5'
7347 3' -55.3 NC_001900.1 + 25767 0.67 0.656212
Target:  5'- cGAcCGCCGugGUGuuGAcUCGCUc- -3'
miRNA:   3'- aCUaGUGGCugCACggCUuGGCGAcg -5'
7347 3' -55.3 NC_001900.1 + 19475 0.67 0.64519
Target:  5'- cGAUgGgCCGGCGgcUGCCGGuggACCGCUc- -3'
miRNA:   3'- aCUAgU-GGCUGC--ACGGCU---UGGCGAcg -5'
7347 3' -55.3 NC_001900.1 + 4166 0.67 0.634157
Target:  5'- uUGAgUCcCCGAUGUGCCc-AUCGCUGg -3'
miRNA:   3'- -ACU-AGuGGCUGCACGGcuUGGCGACg -5'
7347 3' -55.3 NC_001900.1 + 44711 0.67 0.623121
Target:  5'- gGA--ACCGGCG-GCUuuggaGACCGCUGCu -3'
miRNA:   3'- aCUagUGGCUGCaCGGc----UUGGCGACG- -5'
7347 3' -55.3 NC_001900.1 + 24281 0.67 0.634157
Target:  5'- aGGUgGCUGugGUGUCGcccccuuuGCCGCccGCg -3'
miRNA:   3'- aCUAgUGGCugCACGGCu-------UGGCGa-CG- -5'
7347 3' -55.3 NC_001900.1 + 41221 0.67 0.623121
Target:  5'- cUGGUCcugGCUGACG-GCCGcGACggugauccaCGCUGCg -3'
miRNA:   3'- -ACUAG---UGGCUGCaCGGC-UUG---------GCGACG- -5'
7347 3' -55.3 NC_001900.1 + 1417 0.67 0.612094
Target:  5'- cGAUCACUGGCGacaCCGucauCCGCaagGCa -3'
miRNA:   3'- aCUAGUGGCUGCac-GGCuu--GGCGa--CG- -5'
7347 3' -55.3 NC_001900.1 + 33771 0.68 0.546607
Target:  5'- -uGUCcUCGGCGUcucgGCCGAACCGUgcgGCc -3'
miRNA:   3'- acUAGuGGCUGCA----CGGCUUGGCGa--CG- -5'
7347 3' -55.3 NC_001900.1 + 7339 0.68 0.589004
Target:  5'- cGA-CGCCGACGUgGCCucaGAgaaccugagcaagGCCGCUGa -3'
miRNA:   3'- aCUaGUGGCUGCA-CGG---CU-------------UGGCGACg -5'
7347 3' -55.3 NC_001900.1 + 32189 0.68 0.546607
Target:  5'- cGAUC-CCGAC--GCCGAuccaCGCUGUg -3'
miRNA:   3'- aCUAGuGGCUGcaCGGCUug--GCGACG- -5'
7347 3' -55.3 NC_001900.1 + 17455 0.69 0.535883
Target:  5'- cGGUCGgcCCGAacCG-GCCGAACCGCcagaaGCu -3'
miRNA:   3'- aCUAGU--GGCU--GCaCGGCUUGGCGa----CG- -5'
7347 3' -55.3 NC_001900.1 + 18207 0.69 0.514665
Target:  5'- aUGAggCGCuCGACGUGCUGAACaagauCGUgaUGCa -3'
miRNA:   3'- -ACUa-GUG-GCUGCACGGCUUG-----GCG--ACG- -5'
7347 3' -55.3 NC_001900.1 + 15374 0.69 0.514665
Target:  5'- ---cUACCaGACGUGCUGGGCCgacaacGCUGUg -3'
miRNA:   3'- acuaGUGG-CUGCACGGCUUGG------CGACG- -5'
7347 3' -55.3 NC_001900.1 + 40119 0.69 0.487611
Target:  5'- gGGUUGCCGuCGUGCCagaccucgccuucgaGGACCGCguccuccagGCg -3'
miRNA:   3'- aCUAGUGGCuGCACGG---------------CUUGGCGa--------CG- -5'
7347 3' -55.3 NC_001900.1 + 11322 0.69 0.493797
Target:  5'- cGuUCACCGACaugGCCGGuuacGCCgGUUGCg -3'
miRNA:   3'- aCuAGUGGCUGca-CGGCU----UGG-CGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.