miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7347 3' -55.3 NC_001900.1 + 20755 0.67 0.65511
Target:  5'- ---aCGCUGACGUGUCGccgguacaucaagGACCGCgacccGCa -3'
miRNA:   3'- acuaGUGGCUGCACGGC-------------UUGGCGa----CG- -5'
7347 3' -55.3 NC_001900.1 + 19475 0.67 0.64519
Target:  5'- cGAUgGgCCGGCGgcUGCCGGuggACCGCUc- -3'
miRNA:   3'- aCUAgU-GGCUGC--ACGGCU---UGGCGAcg -5'
7347 3' -55.3 NC_001900.1 + 22811 0.67 0.64519
Target:  5'- cGAUCAUgGACGcGCucagCGAAgguCCGCUGUu -3'
miRNA:   3'- aCUAGUGgCUGCaCG----GCUU---GGCGACG- -5'
7347 3' -55.3 NC_001900.1 + 4166 0.67 0.634157
Target:  5'- uUGAgUCcCCGAUGUGCCc-AUCGCUGg -3'
miRNA:   3'- -ACU-AGuGGCUGCACGGcuUGGCGACg -5'
7347 3' -55.3 NC_001900.1 + 24281 0.67 0.634157
Target:  5'- aGGUgGCUGugGUGUCGcccccuuuGCCGCccGCg -3'
miRNA:   3'- aCUAgUGGCugCACGGCu-------UGGCGa-CG- -5'
7347 3' -55.3 NC_001900.1 + 38605 0.67 0.634157
Target:  5'- -cGUCGuCCaGACGgcgauaCCGGAUCGCUGCa -3'
miRNA:   3'- acUAGU-GG-CUGCac----GGCUUGGCGACG- -5'
7347 3' -55.3 NC_001900.1 + 41221 0.67 0.623121
Target:  5'- cUGGUCcugGCUGACG-GCCGcGACggugauccaCGCUGCg -3'
miRNA:   3'- -ACUAG---UGGCUGCaCGGC-UUG---------GCGACG- -5'
7347 3' -55.3 NC_001900.1 + 44711 0.67 0.623121
Target:  5'- gGA--ACCGGCG-GCUuuggaGACCGCUGCu -3'
miRNA:   3'- aCUagUGGCUGCaCGGc----UUGGCGACG- -5'
7347 3' -55.3 NC_001900.1 + 1417 0.67 0.612094
Target:  5'- cGAUCACUGGCGacaCCGucauCCGCaagGCa -3'
miRNA:   3'- aCUAGUGGCUGCac-GGCuu--GGCGa--CG- -5'
7347 3' -55.3 NC_001900.1 + 3089 0.67 0.612094
Target:  5'- aGGUCGuuGACGUGaCCGAcgUGCUcaaGCa -3'
miRNA:   3'- aCUAGUggCUGCAC-GGCUugGCGA---CG- -5'
7347 3' -55.3 NC_001900.1 + 27458 0.67 0.612094
Target:  5'- gGAUCAgCCuGgG-GCCGAGCCGCacgGCc -3'
miRNA:   3'- aCUAGU-GGcUgCaCGGCUUGGCGa--CG- -5'
7347 3' -55.3 NC_001900.1 + 34438 0.67 0.601084
Target:  5'- uUGGgcUCACCGACGU--UGGACagGCUGCu -3'
miRNA:   3'- -ACU--AGUGGCUGCAcgGCUUGg-CGACG- -5'
7347 3' -55.3 NC_001900.1 + 7339 0.68 0.589004
Target:  5'- cGA-CGCCGACGUgGCCucaGAgaaccugagcaagGCCGCUGa -3'
miRNA:   3'- aCUaGUGGCUGCA-CGG---CU-------------UGGCGACg -5'
7347 3' -55.3 NC_001900.1 + 33771 0.68 0.546607
Target:  5'- -uGUCcUCGGCGUcucgGCCGAACCGUgcgGCc -3'
miRNA:   3'- acUAGuGGCUGCA----CGGCUUGGCGa--CG- -5'
7347 3' -55.3 NC_001900.1 + 32189 0.68 0.546607
Target:  5'- cGAUC-CCGAC--GCCGAuccaCGCUGUg -3'
miRNA:   3'- aCUAGuGGCUGcaCGGCUug--GCGACG- -5'
7347 3' -55.3 NC_001900.1 + 17455 0.69 0.535883
Target:  5'- cGGUCGgcCCGAacCG-GCCGAACCGCcagaaGCu -3'
miRNA:   3'- aCUAGU--GGCU--GCaCGGCUUGGCGa----CG- -5'
7347 3' -55.3 NC_001900.1 + 22171 0.69 0.525233
Target:  5'- aGAcCGCCGACG-GCgaCGGuuccgGCCGUUGCg -3'
miRNA:   3'- aCUaGUGGCUGCaCG--GCU-----UGGCGACG- -5'
7347 3' -55.3 NC_001900.1 + 38437 0.69 0.525233
Target:  5'- gUGAUCA-CGGC---CUGGGCCGCUGCa -3'
miRNA:   3'- -ACUAGUgGCUGcacGGCUUGGCGACG- -5'
7347 3' -55.3 NC_001900.1 + 15374 0.69 0.514665
Target:  5'- ---cUACCaGACGUGCUGGGCCgacaacGCUGUg -3'
miRNA:   3'- acuaGUGG-CUGCACGGCUUGG------CGACG- -5'
7347 3' -55.3 NC_001900.1 + 18207 0.69 0.514665
Target:  5'- aUGAggCGCuCGACGUGCUGAACaagauCGUgaUGCa -3'
miRNA:   3'- -ACUa-GUG-GCUGCACGGCUUG-----GCG--ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.