miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7348 3' -51.4 NC_001900.1 + 18107 0.69 0.758599
Target:  5'- -aGCGCCGAcuuCCGUUGccgccuAGUCCAGu -3'
miRNA:   3'- agUGCGGCUuu-GGCAGCu-----UCAGGUUc -5'
7348 3' -51.4 NC_001900.1 + 18904 0.72 0.558524
Target:  5'- cCugGCCGAGAUgGUCcaGGAGgCCAAGa -3'
miRNA:   3'- aGugCGGCUUUGgCAG--CUUCaGGUUC- -5'
7348 3' -51.4 NC_001900.1 + 18950 0.66 0.871881
Target:  5'- gCGCuGUCGAucagGACCG-CGAGGaaUCCAAGa -3'
miRNA:   3'- aGUG-CGGCU----UUGGCaGCUUC--AGGUUC- -5'
7348 3' -51.4 NC_001900.1 + 19545 0.7 0.704457
Target:  5'- aCAcCGCCGugGCCGUgGGAGgaacugcCCAAGg -3'
miRNA:   3'- aGU-GCGGCuuUGGCAgCUUCa------GGUUC- -5'
7348 3' -51.4 NC_001900.1 + 21630 0.66 0.879835
Target:  5'- cCGCGUCGAAcgugacuCCGUCGAGGcgCUGAu -3'
miRNA:   3'- aGUGCGGCUUu------GGCAGCUUCa-GGUUc -5'
7348 3' -51.4 NC_001900.1 + 23351 0.71 0.659727
Target:  5'- aUCGuCGUCGGcaacaccaaGACCGUC-AGGUCCAAGc -3'
miRNA:   3'- -AGU-GCGGCU---------UUGGCAGcUUCAGGUUC- -5'
7348 3' -51.4 NC_001900.1 + 23487 0.71 0.625853
Target:  5'- cCACGCgGGggcagcGGCUGUCGAAGUCUg-- -3'
miRNA:   3'- aGUGCGgCU------UUGGCAGCUUCAGGuuc -5'
7348 3' -51.4 NC_001900.1 + 23845 0.67 0.846477
Target:  5'- -gGCGCUGggGCUGg-GAAGgCCAGGc -3'
miRNA:   3'- agUGCGGCuuUGGCagCUUCaGGUUC- -5'
7348 3' -51.4 NC_001900.1 + 24153 0.7 0.670979
Target:  5'- -aGCGCC---GCCGUCGuAGGUCCGGu -3'
miRNA:   3'- agUGCGGcuuUGGCAGC-UUCAGGUUc -5'
7348 3' -51.4 NC_001900.1 + 24551 0.71 0.659727
Target:  5'- aCGCGCCGAccGCCGUgacCGGAGUCa--- -3'
miRNA:   3'- aGUGCGGCUu-UGGCA---GCUUCAGguuc -5'
7348 3' -51.4 NC_001900.1 + 25252 0.66 0.871881
Target:  5'- -aGCGCCGAuAGCCGacCGGAGcCCGu- -3'
miRNA:   3'- agUGCGGCU-UUGGCa-GCUUCaGGUuc -5'
7348 3' -51.4 NC_001900.1 + 25391 0.66 0.902063
Target:  5'- -aACGCCG-AGCCGaCGAAGUggUCAGa -3'
miRNA:   3'- agUGCGGCuUUGGCaGCUUCA--GGUUc -5'
7348 3' -51.4 NC_001900.1 + 26257 0.71 0.637153
Target:  5'- cUCGCGCuCG--GCCGgCGggGUCCAc- -3'
miRNA:   3'- -AGUGCG-GCuuUGGCaGCuuCAGGUuc -5'
7348 3' -51.4 NC_001900.1 + 26884 0.71 0.614559
Target:  5'- gUCGCaacgGCCGGAACCGUCGccGUCg--- -3'
miRNA:   3'- -AGUG----CGGCUUUGGCAGCuuCAGguuc -5'
7348 3' -51.4 NC_001900.1 + 27529 0.73 0.514753
Target:  5'- cUCACGCCGAGGaaGUCGGcGGUCUg-- -3'
miRNA:   3'- -AGUGCGGCUUUggCAGCU-UCAGGuuc -5'
7348 3' -51.4 NC_001900.1 + 27732 0.72 0.558524
Target:  5'- aCGCGCCGAAcaCGUCGGaguagagcgGGUUCAGGa -3'
miRNA:   3'- aGUGCGGCUUugGCAGCU---------UCAGGUUC- -5'
7348 3' -51.4 NC_001900.1 + 28010 0.65 0.906205
Target:  5'- aUCACGCCGuucgggccgguguAACCGggugCGGAG-CCGc- -3'
miRNA:   3'- -AGUGCGGCu------------UUGGCa---GCUUCaGGUuc -5'
7348 3' -51.4 NC_001900.1 + 29705 0.67 0.828341
Target:  5'- -aGCGCCaGGuacagguACCGgguacCGGAGUCCGGGg -3'
miRNA:   3'- agUGCGG-CUu------UGGCa----GCUUCAGGUUC- -5'
7348 3' -51.4 NC_001900.1 + 30852 0.67 0.846477
Target:  5'- aUCuuGCCGggGagcuguCCGaCGAAGUCgGAGa -3'
miRNA:   3'- -AGugCGGCuuU------GGCaGCUUCAGgUUC- -5'
7348 3' -51.4 NC_001900.1 + 31517 0.66 0.887521
Target:  5'- uUCACGCCGuAGuuGUCGGcgAGaUCCu-- -3'
miRNA:   3'- -AGUGCGGCuUUggCAGCU--UC-AGGuuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.