miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7349 3' -60.7 NC_001900.1 + 16016 0.66 0.437102
Target:  5'- gCgGCGGCGGuGGCCAGcAGCaccaGUCUc -3'
miRNA:   3'- -GgCGUCGCC-CCGGUCcUUGgag-CAGA- -5'
7349 3' -60.7 NC_001900.1 + 31768 0.66 0.427788
Target:  5'- aCCGUucGCGGcGGUCAGGu-CUUCGUUc -3'
miRNA:   3'- -GGCGu-CGCC-CCGGUCCuuGGAGCAGa -5'
7349 3' -60.7 NC_001900.1 + 24625 0.66 0.427788
Target:  5'- aCUGC-GUGGGGCCAaGGcGGCUUCGg-- -3'
miRNA:   3'- -GGCGuCGCCCCGGU-CC-UUGGAGCaga -5'
7349 3' -60.7 NC_001900.1 + 39449 0.66 0.427788
Target:  5'- gCGCAcCGuGGGCCGGGAuACUuggCGUCc -3'
miRNA:   3'- gGCGUcGC-CCCGGUCCU-UGGa--GCAGa -5'
7349 3' -60.7 NC_001900.1 + 3541 0.66 0.418592
Target:  5'- aCGCGGCgcucGGGGCCGGuaacGGCCUgGUg- -3'
miRNA:   3'- gGCGUCG----CCCCGGUCc---UUGGAgCAga -5'
7349 3' -60.7 NC_001900.1 + 40582 0.66 0.409517
Target:  5'- cCUGCGGUGacaGCCAGGAGuCCUCGg-- -3'
miRNA:   3'- -GGCGUCGCcc-CGGUCCUU-GGAGCaga -5'
7349 3' -60.7 NC_001900.1 + 23144 0.67 0.383043
Target:  5'- gCGCAGCccGGGCgAGGAccagACCgUCGUUg -3'
miRNA:   3'- gGCGUCGc-CCCGgUCCU----UGG-AGCAGa -5'
7349 3' -60.7 NC_001900.1 + 30807 0.67 0.34152
Target:  5'- cCCGCcuCGaucaGCCAGGAGCCUgCGUCa -3'
miRNA:   3'- -GGCGucGCcc--CGGUCCUUGGA-GCAGa -5'
7349 3' -60.7 NC_001900.1 + 38662 0.69 0.282066
Target:  5'- aCCGCAuguaCGGGaucGCCAGGcAGCCUCGg-- -3'
miRNA:   3'- -GGCGUc---GCCC---CGGUCC-UUGGAGCaga -5'
7349 3' -60.7 NC_001900.1 + 46619 0.7 0.225325
Target:  5'- aCGCAGcCGGGGCCGucGACCUCa--- -3'
miRNA:   3'- gGCGUC-GCCCCGGUccUUGGAGcaga -5'
7349 3' -60.7 NC_001900.1 + 27905 0.72 0.168975
Target:  5'- cCCGgAGCGGacuguccaccGGCCAGGAagcuggugucgguGCCUCGUa- -3'
miRNA:   3'- -GGCgUCGCC----------CCGGUCCU-------------UGGAGCAga -5'
7349 3' -60.7 NC_001900.1 + 43307 0.74 0.113256
Target:  5'- cCCaCAGCGaGGGCCAGGuuguACCggCGUCg -3'
miRNA:   3'- -GGcGUCGC-CCCGGUCCu---UGGa-GCAGa -5'
7349 3' -60.7 NC_001900.1 + 8046 0.75 0.104338
Target:  5'- cCCaGUGGUGGGGCCAGGGGCCUgaCGg-- -3'
miRNA:   3'- -GG-CGUCGCCCCGGUCCUUGGA--GCaga -5'
7349 3' -60.7 NC_001900.1 + 37287 1.08 0.000316
Target:  5'- cCCGCAGCGGGGCCAGGAACCUCGUCUu -3'
miRNA:   3'- -GGCGUCGCCCCGGUCCUUGGAGCAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.