miRNA display CGI


Results 1 - 8 of 8 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7349 5' -56.3 NC_001900.1 + 36967 0.66 0.654696
Target:  5'- gGuGUgGGGCUUGAUgccuugCCGgUGGGUGu -3'
miRNA:   3'- gCuUAgCCCGAACUA------GGCgACCCGCu -5'
7349 5' -56.3 NC_001900.1 + 15873 0.66 0.604149
Target:  5'- uCGAccUGGGCgUUGAUCCcgacgagguugccaaGCUGGGCc- -3'
miRNA:   3'- -GCUuaGCCCG-AACUAGG---------------CGACCCGcu -5'
7349 5' -56.3 NC_001900.1 + 6004 0.67 0.567059
Target:  5'- gGAAUCGGcGCgagccggUGAccUCCGCgagcUGGaGCGAg -3'
miRNA:   3'- gCUUAGCC-CGa------ACU--AGGCG----ACC-CGCU- -5'
7349 5' -56.3 NC_001900.1 + 8917 0.68 0.534827
Target:  5'- aGAGUCGcGGCagcGGUCCuGCUGGacGCGGc -3'
miRNA:   3'- gCUUAGC-CCGaa-CUAGG-CGACC--CGCU- -5'
7349 5' -56.3 NC_001900.1 + 19870 0.68 0.524222
Target:  5'- cCGAGUCGGGCUcc--CCGgugUGGGCGc -3'
miRNA:   3'- -GCUUAGCCCGAacuaGGCg--ACCCGCu -5'
7349 5' -56.3 NC_001900.1 + 40984 0.69 0.452587
Target:  5'- cCGAA-CGGGCauucgUGAacUCCGCUGcGCGGg -3'
miRNA:   3'- -GCUUaGCCCGa----ACU--AGGCGACcCGCU- -5'
7349 5' -56.3 NC_001900.1 + 39119 0.7 0.377733
Target:  5'- cCGAucucuUCGGGCUUGAUgccgaagaucagUCGCUgGGGCa- -3'
miRNA:   3'- -GCUu----AGCCCGAACUA------------GGCGA-CCCGcu -5'
7349 5' -56.3 NC_001900.1 + 37323 1.09 0.00068
Target:  5'- cCGAAUCGGGCUUGAUCCGCUGGGCGAa -3'
miRNA:   3'- -GCUUAGCCCGAACUAGGCGACCCGCU- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.