Results 1 - 8 of 8 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 7349 | 5' | -56.3 | NC_001900.1 | + | 36967 | 0.66 | 0.654696 |
|
Target: 5'- gGuGUgGGGCUUGAUgccuugCCGgUGGGUGu -3' miRNA: 3'- gCuUAgCCCGAACUA------GGCgACCCGCu -5' |
|||||||
| 7349 | 5' | -56.3 | NC_001900.1 | + | 15873 | 0.66 | 0.604149 |
|
Target: 5'- uCGAccUGGGCgUUGAUCCcgacgagguugccaaGCUGGGCc- -3' miRNA: 3'- -GCUuaGCCCG-AACUAGG---------------CGACCCGcu -5' |
|||||||
| 7349 | 5' | -56.3 | NC_001900.1 | + | 6004 | 0.67 | 0.567059 |
|
Target: 5'- gGAAUCGGcGCgagccggUGAccUCCGCgagcUGGaGCGAg -3' miRNA: 3'- gCUUAGCC-CGa------ACU--AGGCG----ACC-CGCU- -5' |
|||||||
| 7349 | 5' | -56.3 | NC_001900.1 | + | 8917 | 0.68 | 0.534827 |
|
Target: 5'- aGAGUCGcGGCagcGGUCCuGCUGGacGCGGc -3' miRNA: 3'- gCUUAGC-CCGaa-CUAGG-CGACC--CGCU- -5' |
|||||||
| 7349 | 5' | -56.3 | NC_001900.1 | + | 19870 | 0.68 | 0.524222 |
|
Target: 5'- cCGAGUCGGGCUcc--CCGgugUGGGCGc -3' miRNA: 3'- -GCUUAGCCCGAacuaGGCg--ACCCGCu -5' |
|||||||
| 7349 | 5' | -56.3 | NC_001900.1 | + | 40984 | 0.69 | 0.452587 |
|
Target: 5'- cCGAA-CGGGCauucgUGAacUCCGCUGcGCGGg -3' miRNA: 3'- -GCUUaGCCCGa----ACU--AGGCGACcCGCU- -5' |
|||||||
| 7349 | 5' | -56.3 | NC_001900.1 | + | 39119 | 0.7 | 0.377733 |
|
Target: 5'- cCGAucucuUCGGGCUUGAUgccgaagaucagUCGCUgGGGCa- -3' miRNA: 3'- -GCUu----AGCCCGAACUA------------GGCGA-CCCGcu -5' |
|||||||
| 7349 | 5' | -56.3 | NC_001900.1 | + | 37323 | 1.09 | 0.00068 |
|
Target: 5'- cCGAAUCGGGCUUGAUCCGCUGGGCGAa -3' miRNA: 3'- -GCUUAGCCCGAACUAGGCGACCCGCU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home