miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7350 5' -57.7 NC_001900.1 + 49001 0.66 0.534641
Target:  5'- aGCG-CCuGGGCgaggcgcucuaGCGUcgGCCCGUGCUUc -3'
miRNA:   3'- -CGCuGGuCUUG-----------CGCAa-CGGGCGCGAG- -5'
7350 5' -57.7 NC_001900.1 + 40316 0.66 0.533586
Target:  5'- cGCGACCacgucguaccgggAGAACGCGgaaUGCaCUGCaGCg- -3'
miRNA:   3'- -CGCUGG-------------UCUUGCGCa--ACG-GGCG-CGag -5'
7350 5' -57.7 NC_001900.1 + 25487 0.66 0.52412
Target:  5'- cCGACCGuaGGCGCGUUGUCguugaCGCGCa- -3'
miRNA:   3'- cGCUGGUc-UUGCGCAACGG-----GCGCGag -5'
7350 5' -57.7 NC_001900.1 + 48552 0.67 0.513678
Target:  5'- uUGGCCGGAACGUagGUUGUCgGcCGCa- -3'
miRNA:   3'- cGCUGGUCUUGCG--CAACGGgC-GCGag -5'
7350 5' -57.7 NC_001900.1 + 38246 0.67 0.502292
Target:  5'- uGCGGggaagcuCCGGGugGUGgaGUCUGCGCUg -3'
miRNA:   3'- -CGCU-------GGUCUugCGCaaCGGGCGCGAg -5'
7350 5' -57.7 NC_001900.1 + 47716 0.67 0.46287
Target:  5'- gGCGACCGccAGCGCGUUGaacgCCGCacGCUUc -3'
miRNA:   3'- -CGCUGGUc-UUGCGCAACg---GGCG--CGAG- -5'
7350 5' -57.7 NC_001900.1 + 32455 0.67 0.46287
Target:  5'- uUGACCGGAACGuCGgccgacaGCUCcCGCUCg -3'
miRNA:   3'- cGCUGGUCUUGC-GCaa-----CGGGcGCGAG- -5'
7350 5' -57.7 NC_001900.1 + 45042 0.67 0.46287
Target:  5'- aCGGCCAGAugGUcaggcgGUccuUGCCUG-GCUCg -3'
miRNA:   3'- cGCUGGUCUugCG------CA---ACGGGCgCGAG- -5'
7350 5' -57.7 NC_001900.1 + 11436 0.68 0.424189
Target:  5'- cCGugCGGAGCGCGg-GCaaCGCGUUCu -3'
miRNA:   3'- cGCugGUCUUGCGCaaCGg-GCGCGAG- -5'
7350 5' -57.7 NC_001900.1 + 3003 0.68 0.414824
Target:  5'- uCGGCCucauGAACGUcgagaucaugGUUGCcaugcgCCGCGCUCg -3'
miRNA:   3'- cGCUGGu---CUUGCG----------CAACG------GGCGCGAG- -5'
7350 5' -57.7 NC_001900.1 + 30786 0.69 0.378668
Target:  5'- -aGACCcuGGACGaCGUucuUGCCCGC-CUCg -3'
miRNA:   3'- cgCUGGu-CUUGC-GCA---ACGGGCGcGAG- -5'
7350 5' -57.7 NC_001900.1 + 5228 0.69 0.372561
Target:  5'- cGCGcuggccguucccgacGCCAGaAGCgGCGUUccgguucGCUCGCGCUCa -3'
miRNA:   3'- -CGC---------------UGGUC-UUG-CGCAA-------CGGGCGCGAG- -5'
7350 5' -57.7 NC_001900.1 + 19145 0.7 0.320676
Target:  5'- -aGGCgCAGGAgcuuCGCGUccUGgCCGCGCUCu -3'
miRNA:   3'- cgCUG-GUCUU----GCGCA--ACgGGCGCGAG- -5'
7350 5' -57.7 NC_001900.1 + 23319 0.74 0.172818
Target:  5'- uGCG-CCGGGGCGCG--GCCCGCGUc- -3'
miRNA:   3'- -CGCuGGUCUUGCGCaaCGGGCGCGag -5'
7350 5' -57.7 NC_001900.1 + 31738 0.66 0.577395
Target:  5'- aGCGAggagauguCC-GAACGCGUUGgcuCCUGCGUUg -3'
miRNA:   3'- -CGCU--------GGuCUUGCGCAAC---GGGCGCGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.