miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7352 3' -63.3 NC_001900.1 + 6646 0.66 0.310509
Target:  5'- aUCCCCUCGGgccugGCCuGCcuGCCGauacGGCAc -3'
miRNA:   3'- -AGGGGAGCCag---UGG-CGucCGGU----CCGU- -5'
7352 3' -63.3 NC_001900.1 + 47201 0.66 0.296021
Target:  5'- aUCgCaUUCGGauUCGcCCGCAGGCCgAGGCc -3'
miRNA:   3'- -AGgG-GAGCC--AGU-GGCGUCCGG-UCCGu -5'
7352 3' -63.3 NC_001900.1 + 41844 0.66 0.296021
Target:  5'- aUUCCCUCGGUgAUcggaCGCuGGCCAaGCu -3'
miRNA:   3'- -AGGGGAGCCAgUG----GCGuCCGGUcCGu -5'
7352 3' -63.3 NC_001900.1 + 6505 0.66 0.288976
Target:  5'- gUCCCCcagcUCGG-C-CCGCuGGCCAGcCAg -3'
miRNA:   3'- -AGGGG----AGCCaGuGGCGuCCGGUCcGU- -5'
7352 3' -63.3 NC_001900.1 + 1635 0.66 0.274612
Target:  5'- aCCCC-CGGUCAgCGCgcucuguacgaggAGGCguGGUu -3'
miRNA:   3'- aGGGGaGCCAGUgGCG-------------UCCGguCCGu -5'
7352 3' -63.3 NC_001900.1 + 22267 0.66 0.268633
Target:  5'- gCCCCUCGucuGUUGCaGCAGGCgGGGg- -3'
miRNA:   3'- aGGGGAGC---CAGUGgCGUCCGgUCCgu -5'
7352 3' -63.3 NC_001900.1 + 34739 0.67 0.262114
Target:  5'- aCCCCUCuuuggugauacgGGUCGucuuguUCGCucuGGCCAGGUu -3'
miRNA:   3'- aGGGGAG------------CCAGU------GGCGu--CCGGUCCGu -5'
7352 3' -63.3 NC_001900.1 + 48287 0.67 0.237318
Target:  5'- -gCCCUCGuuuagCGCCGCuGGCauaAGGCGc -3'
miRNA:   3'- agGGGAGCca---GUGGCGuCCGg--UCCGU- -5'
7352 3' -63.3 NC_001900.1 + 23517 0.67 0.236725
Target:  5'- aUCCC-CGGUgagGCUGCAGGCCucuuccgGGGCGg -3'
miRNA:   3'- aGGGGaGCCAg--UGGCGUCCGG-------UCCGU- -5'
7352 3' -63.3 NC_001900.1 + 39432 0.68 0.214518
Target:  5'- aCUCC-CGGUggugcguggcgCACCGUGGGCCGGGa- -3'
miRNA:   3'- aGGGGaGCCA-----------GUGGCGUCCGGUCCgu -5'
7352 3' -63.3 NC_001900.1 + 25025 0.68 0.203838
Target:  5'- gCCgCCUCGG-CACCGagguuGGCgCGGGCu -3'
miRNA:   3'- aGG-GGAGCCaGUGGCgu---CCG-GUCCGu -5'
7352 3' -63.3 NC_001900.1 + 36469 0.68 0.198673
Target:  5'- -gCCgUCGuUCACCaGCAGGCuCAGGCc -3'
miRNA:   3'- agGGgAGCcAGUGG-CGUCCG-GUCCGu -5'
7352 3' -63.3 NC_001900.1 + 38795 0.69 0.170027
Target:  5'- aCCCUUCaucaGCCgGUAGGCCAGGCGc -3'
miRNA:   3'- aGGGGAGccagUGG-CGUCCGGUCCGU- -5'
7352 3' -63.3 NC_001900.1 + 41067 0.7 0.145132
Target:  5'- uUCUCCUcCGaGaCGuuGCGGGCCAGGCc -3'
miRNA:   3'- -AGGGGA-GC-CaGUggCGUCCGGUCCGu -5'
7352 3' -63.3 NC_001900.1 + 37363 0.7 0.141321
Target:  5'- -aCCCUUGGUcCACCGagaCGGGCuCGGGUAg -3'
miRNA:   3'- agGGGAGCCA-GUGGC---GUCCG-GUCCGU- -5'
7352 3' -63.3 NC_001900.1 + 26806 0.71 0.130432
Target:  5'- cUCCacgaCCUCGGcCAUCGCuGGGCCGGGgCGg -3'
miRNA:   3'- -AGG----GGAGCCaGUGGCG-UCCGGUCC-GU- -5'
7352 3' -63.3 NC_001900.1 + 45707 0.71 0.128349
Target:  5'- gUCUCCaguucgaggaacaGGUCGCCcGCAGGCCAGGgGg -3'
miRNA:   3'- -AGGGGag-----------CCAGUGG-CGUCCGGUCCgU- -5'
7352 3' -63.3 NC_001900.1 + 38910 0.88 0.006408
Target:  5'- gUCCCCUCGGaC-UCGCAGGCCAGGCAg -3'
miRNA:   3'- -AGGGGAGCCaGuGGCGUCCGGUCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.