miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7355 3' -56.4 NC_001900.1 + 38098 0.66 0.632715
Target:  5'- -aCGUACGUCUUGGC-CUCGgCGu-- -3'
miRNA:   3'- gaGCAUGCGGAACCGcGAGUgGCucu -5'
7355 3' -56.4 NC_001900.1 + 42254 0.66 0.599764
Target:  5'- gUCGUACGCUgcgagGGCGUUC-UCGAu- -3'
miRNA:   3'- gAGCAUGCGGaa---CCGCGAGuGGCUcu -5'
7355 3' -56.4 NC_001900.1 + 40748 0.67 0.588823
Target:  5'- gUCGUcaGCGCCgcGaGCGC-CGCCGuGAa -3'
miRNA:   3'- gAGCA--UGCGGaaC-CGCGaGUGGCuCU- -5'
7355 3' -56.4 NC_001900.1 + 44751 0.67 0.581186
Target:  5'- gCUUGUACGCCaucgggcacuucgugUacUGGUugaucugGCUCACCGAGc -3'
miRNA:   3'- -GAGCAUGCGG---------------A--ACCG-------CGAGUGGCUCu -5'
7355 3' -56.4 NC_001900.1 + 35554 0.68 0.513699
Target:  5'- uUCGUAUGCCUUgaaauaGGCGUcaGCCGAa- -3'
miRNA:   3'- gAGCAUGCGGAA------CCGCGagUGGCUcu -5'
7355 3' -56.4 NC_001900.1 + 32359 0.68 0.503263
Target:  5'- aCUCGUACGCCUccugGGCGaaCgACUGAa- -3'
miRNA:   3'- -GAGCAUGCGGAa---CCGCgaG-UGGCUcu -5'
7355 3' -56.4 NC_001900.1 + 27056 0.68 0.49292
Target:  5'- uUgGUACGCCUgGGCGCU-GCUGAu- -3'
miRNA:   3'- gAgCAUGCGGAaCCGCGAgUGGCUcu -5'
7355 3' -56.4 NC_001900.1 + 272 0.69 0.433106
Target:  5'- gCUCGcuaagaGCGCCUuucgGGCGCUC-CUGAGu -3'
miRNA:   3'- -GAGCa-----UGCGGAa---CCGCGAGuGGCUCu -5'
7355 3' -56.4 NC_001900.1 + 40884 0.7 0.386627
Target:  5'- -aCGUACGCCUUcucGGCGaccguCUCgguGCCGGGAu -3'
miRNA:   3'- gaGCAUGCGGAA---CCGC-----GAG---UGGCUCU- -5'
7355 3' -56.4 NC_001900.1 + 27513 0.71 0.33537
Target:  5'- -gCGcacCGUCUUGGUGCUCacGCCGAGGa -3'
miRNA:   3'- gaGCau-GCGGAACCGCGAG--UGGCUCU- -5'
7355 3' -56.4 NC_001900.1 + 18249 0.72 0.304054
Target:  5'- cCUCGUACGaCCUccaGGUGCUCgACCGGu- -3'
miRNA:   3'- -GAGCAUGC-GGAa--CCGCGAG-UGGCUcu -5'
7355 3' -56.4 NC_001900.1 + 23316 0.73 0.241927
Target:  5'- -gCGUGCGCCggGGCGCggcccgcgUCGgCGAGAa -3'
miRNA:   3'- gaGCAUGCGGaaCCGCG--------AGUgGCUCU- -5'
7355 3' -56.4 NC_001900.1 + 40391 1.09 0.00068
Target:  5'- cCUCGUACGCCUUGGCGCUCACCGAGAg -3'
miRNA:   3'- -GAGCAUGCGGAACCGCGAGUGGCUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.