miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7355 5' -62.8 NC_001900.1 + 3530 0.66 0.300599
Target:  5'- gGACGCCAucgacGCGGcgcucGGgGCCGGUaacgGCCUGg -3'
miRNA:   3'- -UUGUGGU-----CGCC-----CCgCGGCCA----CGGAUg -5'
7355 5' -62.8 NC_001900.1 + 8043 0.66 0.27247
Target:  5'- aGAC-CCAGUGGuGGgGCCaGGgGCCUGa -3'
miRNA:   3'- -UUGuGGUCGCC-CCgCGG-CCaCGGAUg -5'
7355 5' -62.8 NC_001900.1 + 2625 0.66 0.265115
Target:  5'- cAACGCCAcCcuGGGCGUCguuaagcgggccaGGUGCCUGCu -3'
miRNA:   3'- -UUGUGGUcGc-CCCGCGG-------------CCACGGAUG- -5'
7355 5' -62.8 NC_001900.1 + 34023 0.67 0.259216
Target:  5'- --gGCCGGCGuauGUGCagCGGUGCCUGCu -3'
miRNA:   3'- uugUGGUCGCcc-CGCG--GCCACGGAUG- -5'
7355 5' -62.8 NC_001900.1 + 27920 0.67 0.252789
Target:  5'- -cCACCGGCcaGGaagcuGGUGUCGGUGCCUc- -3'
miRNA:   3'- uuGUGGUCG--CC-----CCGCGGCCACGGAug -5'
7355 5' -62.8 NC_001900.1 + 31278 0.68 0.216947
Target:  5'- -cCACCAGCGuGGGCaGCauCGGcugaaucGCCUGCa -3'
miRNA:   3'- uuGUGGUCGC-CCCG-CG--GCCa------CGGAUG- -5'
7355 5' -62.8 NC_001900.1 + 8637 0.68 0.211414
Target:  5'- aGGCACCGGCGcccCGCUGGUGuuCCUGCa -3'
miRNA:   3'- -UUGUGGUCGCcccGCGGCCAC--GGAUG- -5'
7355 5' -62.8 NC_001900.1 + 47848 0.68 0.205468
Target:  5'- uACACCAcCGGuGCcugcguuGCCGGUGCCUAa -3'
miRNA:   3'- uUGUGGUcGCCcCG-------CGGCCACGGAUg -5'
7355 5' -62.8 NC_001900.1 + 45592 0.68 0.199148
Target:  5'- gGACACgucguuguagucgaUGGcCGGGGUGUCGGUGCCg-- -3'
miRNA:   3'- -UUGUG--------------GUC-GCCCCGCGGCCACGGaug -5'
7355 5' -62.8 NC_001900.1 + 2210 0.68 0.190484
Target:  5'- -cCACCaAGUGGGGUgGCUGGgaggGCCUGg -3'
miRNA:   3'- uuGUGG-UCGCCCCG-CGGCCa---CGGAUg -5'
7355 5' -62.8 NC_001900.1 + 5010 0.71 0.134583
Target:  5'- cACGgCGGCGGGG-GCCGGUacucgcacaccGCUUGCa -3'
miRNA:   3'- uUGUgGUCGCCCCgCGGCCA-----------CGGAUG- -5'
7355 5' -62.8 NC_001900.1 + 40428 1.06 0.000234
Target:  5'- gAACACCAGCGGGGCGCCGGUGCCUACc -3'
miRNA:   3'- -UUGUGGUCGCCCCGCGGCCACGGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.