Results 1 - 8 of 8 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 7358 | 3' | -55.1 | NC_001900.1 | + | 26291 | 0.66 | 0.726924 |
|
Target: 5'- cGGUag-CGGuGuCGaaCGCGCCUUCGg -3' miRNA: 3'- -UCAgcaGCCuCuGCaaGCGCGGAAGC- -5' |
|||||||
| 7358 | 3' | -55.1 | NC_001900.1 | + | 42972 | 0.67 | 0.662241 |
|
Target: 5'- cGUCGagGGGGACGcgaagccUCGCgGCCgUCGa -3' miRNA: 3'- uCAGCagCCUCUGCa------AGCG-CGGaAGC- -5' |
|||||||
| 7358 | 3' | -55.1 | NC_001900.1 | + | 46284 | 0.68 | 0.574769 |
|
Target: 5'- cAGUaGUCGGAGugcuggaGUUCGaaGCCUUCGa -3' miRNA: 3'- -UCAgCAGCCUCug-----CAAGCg-CGGAAGC- -5' |
|||||||
| 7358 | 3' | -55.1 | NC_001900.1 | + | 18784 | 0.69 | 0.542496 |
|
Target: 5'- uGUCG-CGGAGGCGUUCGaggaGCUg--- -3' miRNA: 3'- uCAGCaGCCUCUGCAAGCg---CGGaagc -5' |
|||||||
| 7358 | 3' | -55.1 | NC_001900.1 | + | 11723 | 0.69 | 0.531867 |
|
Target: 5'- gGGuUCGUCGGAGGaGUUCGC-CCagCGg -3' miRNA: 3'- -UC-AGCAGCCUCUgCAAGCGcGGaaGC- -5' |
|||||||
| 7358 | 3' | -55.1 | NC_001900.1 | + | 32681 | 0.74 | 0.31005 |
|
Target: 5'- aAGUCGUCGG-GACGcggguaugccuUggGUGCCUUCGg -3' miRNA: 3'- -UCAGCAGCCuCUGC-----------AagCGCGGAAGC- -5' |
|||||||
| 7358 | 3' | -55.1 | NC_001900.1 | + | 33765 | 0.77 | 0.184912 |
|
Target: 5'- gGGUCGU-GGAGGCGUUCGgGCCg--- -3' miRNA: 3'- -UCAGCAgCCUCUGCAAGCgCGGaagc -5' |
|||||||
| 7358 | 3' | -55.1 | NC_001900.1 | + | 41487 | 1.09 | 0.001044 |
|
Target: 5'- aAGUCGUCGGAGACGUUCGCGCCUUCGa -3' miRNA: 3'- -UCAGCAGCCUCUGCAAGCGCGGAAGC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home