miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7359 3' -58.1 NC_001900.1 + 27448 0.66 0.549052
Target:  5'- gAGCACCGAUgugCCgacGcGAUCuccgaUCCAGCAGu -3'
miRNA:   3'- -UCGUGGCUG---GGa--C-CUAG-----AGGUCGUCc -5'
7359 3' -58.1 NC_001900.1 + 36807 0.66 0.549052
Target:  5'- cGuCGCCGACCCagugcgGGAUCuUCUGGCccguGGu -3'
miRNA:   3'- uC-GUGGCUGGGa-----CCUAG-AGGUCGu---CC- -5'
7359 3' -58.1 NC_001900.1 + 39572 0.66 0.549052
Target:  5'- --gACCGGCCgUGGAcguaagcgUCgguguagcCCAGCGGGg -3'
miRNA:   3'- ucgUGGCUGGgACCU--------AGa-------GGUCGUCC- -5'
7359 3' -58.1 NC_001900.1 + 33308 0.66 0.506051
Target:  5'- cGGCGCaGGCCgcaccuccacgguCUGGGUCUgCugGGCAGGg -3'
miRNA:   3'- -UCGUGgCUGG-------------GACCUAGAgG--UCGUCC- -5'
7359 3' -58.1 NC_001900.1 + 28157 0.67 0.446904
Target:  5'- gGGCcUUGAgCCCuUGGuUCUCCAGCAGc -3'
miRNA:   3'- -UCGuGGCU-GGG-ACCuAGAGGUCGUCc -5'
7359 3' -58.1 NC_001900.1 + 42014 0.67 0.446904
Target:  5'- gGGCACacgcccgaucUGACCCUuGAUCccUCCuAGCGGGa -3'
miRNA:   3'- -UCGUG----------GCUGGGAcCUAG--AGG-UCGUCC- -5'
7359 3' -58.1 NC_001900.1 + 34863 0.68 0.424904
Target:  5'- aGGCACCGGCCCagaGGccgugccgccgaacGUCUUCAGCu-- -3'
miRNA:   3'- -UCGUGGCUGGGa--CC--------------UAGAGGUCGucc -5'
7359 3' -58.1 NC_001900.1 + 31390 0.68 0.418337
Target:  5'- cAGCAUCGugCCgagGGuGUCggCCAGCGuGGu -3'
miRNA:   3'- -UCGUGGCugGGa--CC-UAGa-GGUCGU-CC- -5'
7359 3' -58.1 NC_001900.1 + 4965 0.68 0.409064
Target:  5'- cGUugCGGCCCUGGGauUCaccCCGGCAu- -3'
miRNA:   3'- uCGugGCUGGGACCU--AGa--GGUCGUcc -5'
7359 3' -58.1 NC_001900.1 + 43337 0.68 0.409064
Target:  5'- cGgGCCGACCgUGGGUCUgCCAGa--- -3'
miRNA:   3'- uCgUGGCUGGgACCUAGA-GGUCgucc -5'
7359 3' -58.1 NC_001900.1 + 6237 0.68 0.399921
Target:  5'- gGGCAUCG-CCCU-GAUCUggGGCGGGa -3'
miRNA:   3'- -UCGUGGCuGGGAcCUAGAggUCGUCC- -5'
7359 3' -58.1 NC_001900.1 + 37783 0.7 0.300869
Target:  5'- cGGUGCCuuuGACCCUGGcgAUCUUCAuCAGGa -3'
miRNA:   3'- -UCGUGG---CUGGGACC--UAGAGGUcGUCC- -5'
7359 3' -58.1 NC_001900.1 + 43449 0.73 0.192973
Target:  5'- cGGCACCGAUgCCUGcccagcgcagcuccGAcagCUCCAGCGGGu -3'
miRNA:   3'- -UCGUGGCUG-GGAC--------------CUa--GAGGUCGUCC- -5'
7359 3' -58.1 NC_001900.1 + 41628 1.1 0.000405
Target:  5'- gAGCACCGACCCUGGAUCUCCAGCAGGu -3'
miRNA:   3'- -UCGUGGCUGGGACCUAGAGGUCGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.