Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7359 | 5' | -53.1 | NC_001900.1 | + | 38159 | 0.66 | 0.817104 |
Target: 5'- cGUCCag--GAAcuGCugGAUCCGGUGg -3' miRNA: 3'- -UAGGgcaaCUUcuUGugCUAGGCCGC- -5' |
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7359 | 5' | -53.1 | NC_001900.1 | + | 15091 | 0.66 | 0.807495 |
Target: 5'- -aCCCGUcGAccuGGACugGAgccaCCGGCu -3' miRNA: 3'- uaGGGCAaCUu--CUUGugCUa---GGCCGc -5' |
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7359 | 5' | -53.1 | NC_001900.1 | + | 30329 | 0.67 | 0.767247 |
Target: 5'- gAUCCCGUacucguUGAGGAGCACGGccUCCc--- -3' miRNA: 3'- -UAGGGCA------ACUUCUUGUGCU--AGGccgc -5' |
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7359 | 5' | -53.1 | NC_001900.1 | + | 29534 | 0.68 | 0.702761 |
Target: 5'- cAUCCCGagacguGGACugGAUCUGGUa -3' miRNA: 3'- -UAGGGCaacuu-CUUGugCUAGGCCGc -5' |
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7359 | 5' | -53.1 | NC_001900.1 | + | 8903 | 0.69 | 0.617655 |
Target: 5'- uUCgCGUucgacugugagcgccUGGAGGACGCGGUCCucgaaGGCGa -3' miRNA: 3'- uAGgGCA---------------ACUUCUUGUGCUAGG-----CCGC- -5' |
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7359 | 5' | -53.1 | NC_001900.1 | + | 10219 | 0.72 | 0.471639 |
Target: 5'- gGUCgaGcgGAAGAACGCGAUCuuCGGCGg -3' miRNA: 3'- -UAGggCaaCUUCUUGUGCUAG--GCCGC- -5' |
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7359 | 5' | -53.1 | NC_001900.1 | + | 9173 | 0.73 | 0.393118 |
Target: 5'- -cCCCGgacagGAGGAGauCGCuGAUCCGGCGa -3' miRNA: 3'- uaGGGCaa---CUUCUU--GUG-CUAGGCCGC- -5' |
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7359 | 5' | -53.1 | NC_001900.1 | + | 21913 | 0.74 | 0.33176 |
Target: 5'- cUCCCGUUGAuugcaggcgucGGGGCgaucACGcAUCCGGCGu -3' miRNA: 3'- uAGGGCAACU-----------UCUUG----UGC-UAGGCCGC- -5' |
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7359 | 5' | -53.1 | NC_001900.1 | + | 41666 | 1.06 | 0.002214 |
Target: 5'- gAUCCCGUUGAAGAACACGAUCCGGCGc -3' miRNA: 3'- -UAGGGCAACUUCUUGUGCUAGGCCGC- -5' |
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7359 | 5' | -53.1 | NC_001900.1 | + | 41896 | 0.7 | 0.572862 |
Target: 5'- aGUCCCGgccaccgaUGAAGcgcuggccuucauCACGAUCCGGCc -3' miRNA: 3'- -UAGGGCa-------ACUUCuu-----------GUGCUAGGCCGc -5' |
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7359 | 5' | -53.1 | NC_001900.1 | + | 15254 | 0.66 | 0.777557 |
Target: 5'- gAUCCCGacGAAGGACACcuuGGUCgaGGCc -3' miRNA: 3'- -UAGGGCaaCUUCUUGUG---CUAGg-CCGc -5' |
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7359 | 5' | -53.1 | NC_001900.1 | + | 12357 | 0.66 | 0.817104 |
Target: 5'- -aCCUGcacAAGAacGCACGGUCgCGGCGg -3' miRNA: 3'- uaGGGCaacUUCU--UGUGCUAG-GCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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