miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7360 5' -57.9 NC_001900.1 + 6230 0.66 0.552073
Target:  5'- --gCAUCcUGGGCAU-CGCCCuGAUCUg -3'
miRNA:   3'- cugGUAGaGCCCGUGuGCGGG-CUAGA- -5'
7360 5' -57.9 NC_001900.1 + 5693 0.67 0.449387
Target:  5'- cGACC-UCgaaaCGGuCACGCGCCgGAUCa -3'
miRNA:   3'- -CUGGuAGa---GCCcGUGUGCGGgCUAGa -5'
7360 5' -57.9 NC_001900.1 + 45994 0.68 0.427255
Target:  5'- cGACCuucccgccggucggGUCggCGGGUGCcCGCUCGAUCUc -3'
miRNA:   3'- -CUGG--------------UAGa-GCCCGUGuGCGGGCUAGA- -5'
7360 5' -57.9 NC_001900.1 + 19655 0.68 0.420649
Target:  5'- aGGCCAaCUgGGGCGCuCGCgaGAUCg -3'
miRNA:   3'- -CUGGUaGAgCCCGUGuGCGggCUAGa -5'
7360 5' -57.9 NC_001900.1 + 43488 0.69 0.384114
Target:  5'- cGGCCAgCUCGGuGCGC-CGCCUGcUCc -3'
miRNA:   3'- -CUGGUaGAGCC-CGUGuGCGGGCuAGa -5'
7360 5' -57.9 NC_001900.1 + 46900 0.69 0.366652
Target:  5'- uGGCCAUCUCGGcCACgaACGCCCu---- -3'
miRNA:   3'- -CUGGUAGAGCCcGUG--UGCGGGcuaga -5'
7360 5' -57.9 NC_001900.1 + 10182 0.69 0.366652
Target:  5'- aGGCCAUCa-GGGcCGCAgagagcCGCCUGAUCa -3'
miRNA:   3'- -CUGGUAGagCCC-GUGU------GCGGGCUAGa -5'
7360 5' -57.9 NC_001900.1 + 17579 0.69 0.349745
Target:  5'- cACCAUCUCGcGCAC-CGUCCGGgggaUCUa -3'
miRNA:   3'- cUGGUAGAGCcCGUGuGCGGGCU----AGA- -5'
7360 5' -57.9 NC_001900.1 + 22952 0.7 0.333401
Target:  5'- -cCCGUgUUGGGCgACAC-CCCGGUCg -3'
miRNA:   3'- cuGGUAgAGCCCG-UGUGcGGGCUAGa -5'
7360 5' -57.9 NC_001900.1 + 27516 0.7 0.333401
Target:  5'- cACCGUCUUGGuGCuCACGCCgaggaagucggCGGUCUg -3'
miRNA:   3'- cUGGUAGAGCC-CGuGUGCGG-----------GCUAGA- -5'
7360 5' -57.9 NC_001900.1 + 24801 0.7 0.32544
Target:  5'- aGCCAccuUCUCGGGCggugGCACGCUC-AUCg -3'
miRNA:   3'- cUGGU---AGAGCCCG----UGUGCGGGcUAGa -5'
7360 5' -57.9 NC_001900.1 + 43759 0.7 0.309947
Target:  5'- cGACCAUCU-GGGUAgGCGaugaugacuuCCCGGUCg -3'
miRNA:   3'- -CUGGUAGAgCCCGUgUGC----------GGGCUAGa -5'
7360 5' -57.9 NC_001900.1 + 23641 0.7 0.309947
Target:  5'- gGugCGcCUCGGGCACACGaCuCCGcgCa -3'
miRNA:   3'- -CugGUaGAGCCCGUGUGC-G-GGCuaGa -5'
7360 5' -57.9 NC_001900.1 + 39864 0.75 0.15749
Target:  5'- aGACCAucucgUCUCGGGCGauCGCCgGAUCa -3'
miRNA:   3'- -CUGGU-----AGAGCCCGUguGCGGgCUAGa -5'
7360 5' -57.9 NC_001900.1 + 42004 1.07 0.000606
Target:  5'- gGACCAUCUCGGGCACACGCCCGAUCUg -3'
miRNA:   3'- -CUGGUAGAGCCCGUGUGCGGGCUAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.