miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7362 5' -60.1 NC_001900.1 + 43628 0.66 0.432681
Target:  5'- gGGGUGuuGCC-GAGgUcGGUucgggugucguaggcGUCCCCg -3'
miRNA:   3'- gCCCACggCGGaCUCgA-CUA---------------CAGGGG- -5'
7362 5' -60.1 NC_001900.1 + 28172 0.66 0.410513
Target:  5'- -cGGUGCCccaGCCaGAGUUguccucGAUGUCCCa -3'
miRNA:   3'- gcCCACGG---CGGaCUCGA------CUACAGGGg -5'
7362 5' -60.1 NC_001900.1 + 36564 0.67 0.401487
Target:  5'- gCGGGUGgcCCGCaugaaGAGCuuguUGAUGUCgCCu -3'
miRNA:   3'- -GCCCAC--GGCGga---CUCG----ACUACAGgGG- -5'
7362 5' -60.1 NC_001900.1 + 11950 0.67 0.383819
Target:  5'- -cGGUGCUGCCUGAGUUcuacaaGGUGgUCCg- -3'
miRNA:   3'- gcCCACGGCGGACUCGA------CUAC-AGGgg -5'
7362 5' -60.1 NC_001900.1 + 24392 0.68 0.318474
Target:  5'- aCGGGaUGUcgacgccaCGCCUGAGCgugGccGUCaCCCa -3'
miRNA:   3'- -GCCC-ACG--------GCGGACUCGa--CuaCAG-GGG- -5'
7362 5' -60.1 NC_001900.1 + 6763 0.75 0.118858
Target:  5'- aGGGUGUCGCC-GAGCUGA--UCCUg -3'
miRNA:   3'- gCCCACGGCGGaCUCGACUacAGGGg -5'
7362 5' -60.1 NC_001900.1 + 43147 1.1 0.000253
Target:  5'- uCGGGUGCCGCCUGAGCUGAUGUCCCCc -3'
miRNA:   3'- -GCCCACGGCGGACUCGACUACAGGGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.