miRNA display CGI


Results 1 - 11 of 11 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7365 5' -55.2 NC_001900.1 + 8600 0.66 0.708948
Target:  5'- uCCUCGcUGAcGGUUUC-CGCGUCgGg -3'
miRNA:   3'- -GGAGCcACUaCCGAAGuGCGCAGgUg -5'
7365 5' -55.2 NC_001900.1 + 25644 0.66 0.708948
Target:  5'- aCCgugCGGUGuucuguGUGGCUccCugGUcgGUCCACu -3'
miRNA:   3'- -GGa--GCCAC------UACCGAa-GugCG--CAGGUG- -5'
7365 5' -55.2 NC_001900.1 + 9118 0.66 0.687242
Target:  5'- aUUCGGUGuccgGGCUcagguucguUCGCgcuGCGUUCGCg -3'
miRNA:   3'- gGAGCCACua--CCGA---------AGUG---CGCAGGUG- -5'
7365 5' -55.2 NC_001900.1 + 28785 0.66 0.676304
Target:  5'- uCCUUGGUGAgGGCcUCGaacaccUG-GUCCACg -3'
miRNA:   3'- -GGAGCCACUaCCGaAGU------GCgCAGGUG- -5'
7365 5' -55.2 NC_001900.1 + 12937 0.67 0.610162
Target:  5'- aCCUCGucgcaguccGUGucgaGGCUgagUACGCGUUCACu -3'
miRNA:   3'- -GGAGC---------CACua--CCGAa--GUGCGCAGGUG- -5'
7365 5' -55.2 NC_001900.1 + 18071 0.69 0.544676
Target:  5'- gCCgUGGUGcaGGCUg-GCGCGUCCAUc -3'
miRNA:   3'- -GGaGCCACuaCCGAagUGCGCAGGUG- -5'
7365 5' -55.2 NC_001900.1 + 31593 0.7 0.471456
Target:  5'- gCUCGGUGA--GCUUCugGCGguucggCCGg -3'
miRNA:   3'- gGAGCCACUacCGAAGugCGCa-----GGUg -5'
7365 5' -55.2 NC_001900.1 + 44570 0.73 0.333985
Target:  5'- uCCUCGGUGAaGGCUccaACGuCGUUgGCg -3'
miRNA:   3'- -GGAGCCACUaCCGAag-UGC-GCAGgUG- -5'
7365 5' -55.2 NC_001900.1 + 30177 0.74 0.252024
Target:  5'- cCCUCGGUGAUGGCcuuggagaucgCAC-CGUCCcCg -3'
miRNA:   3'- -GGAGCCACUACCGaa---------GUGcGCAGGuG- -5'
7365 5' -55.2 NC_001900.1 + 36758 0.76 0.216496
Target:  5'- cCCUUGGUGAUgGGCUUCAUGUcacccucaccGaUCCACu -3'
miRNA:   3'- -GGAGCCACUA-CCGAAGUGCG----------C-AGGUG- -5'
7365 5' -55.2 NC_001900.1 + 44126 1.11 0.0007
Target:  5'- uCCUCGGUGAUGGCUUCACGCGUCCACu -3'
miRNA:   3'- -GGAGCCACUACCGAAGUGCGCAGGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.