Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
7366 | 5' | -57.2 | NC_001900.1 | + | 12058 | 0.67 | 0.532738 |
Target: 5'- gCAGCGGUucGGCACGUCGGuGAUcaUCGg -3' miRNA: 3'- gGUCGCUAc-CCGUGUAGCCcCUG--AGU- -5' |
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7366 | 5' | -57.2 | NC_001900.1 | + | 38709 | 0.68 | 0.48915 |
Target: 5'- gCGGCGucagccuucgcGGcGUACGUCGGGGuGCUCGg -3' miRNA: 3'- gGUCGCua---------CC-CGUGUAGCCCC-UGAGU- -5' |
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7366 | 5' | -57.2 | NC_001900.1 | + | 31280 | 0.68 | 0.461037 |
Target: 5'- aCCAGCG-UGGGCAgCAUCGGcuGAaUCGc -3' miRNA: 3'- -GGUCGCuACCCGU-GUAGCCc-CUgAGU- -5' |
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7366 | 5' | -57.2 | NC_001900.1 | + | 21377 | 0.69 | 0.431892 |
Target: 5'- gCguGCGAUGGGUAucucgcuuccCAUUGcGGGGCUUg -3' miRNA: 3'- -GguCGCUACCCGU----------GUAGC-CCCUGAGu -5' |
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7366 | 5' | -57.2 | NC_001900.1 | + | 21796 | 0.69 | 0.431892 |
Target: 5'- aCGGCGcuAUGGG-ACAagCGGGGAUUCu -3' miRNA: 3'- gGUCGC--UACCCgUGUa-GCCCCUGAGu -5' |
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7366 | 5' | -57.2 | NC_001900.1 | + | 14112 | 0.74 | 0.186243 |
Target: 5'- gCCAGCGGUGGGCGCucuUUGGaGACg-- -3' miRNA: 3'- -GGUCGCUACCCGUGu--AGCCcCUGagu -5' |
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7366 | 5' | -57.2 | NC_001900.1 | + | 39472 | 0.75 | 0.181323 |
Target: 5'- cUCGGCGuacauGCGCGUCGGGGGCUCc -3' miRNA: 3'- -GGUCGCuacc-CGUGUAGCCCCUGAGu -5' |
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7366 | 5' | -57.2 | NC_001900.1 | + | 44896 | 1.01 | 0.002129 |
Target: 5'- uCCAGCGAUGGGCAC-UCGGGGACUCAa -3' miRNA: 3'- -GGUCGCUACCCGUGuAGCCCCUGAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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