miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7366 5' -57.2 NC_001900.1 + 12058 0.67 0.532738
Target:  5'- gCAGCGGUucGGCACGUCGGuGAUcaUCGg -3'
miRNA:   3'- gGUCGCUAc-CCGUGUAGCCcCUG--AGU- -5'
7366 5' -57.2 NC_001900.1 + 38709 0.68 0.48915
Target:  5'- gCGGCGucagccuucgcGGcGUACGUCGGGGuGCUCGg -3'
miRNA:   3'- gGUCGCua---------CC-CGUGUAGCCCC-UGAGU- -5'
7366 5' -57.2 NC_001900.1 + 31280 0.68 0.461037
Target:  5'- aCCAGCG-UGGGCAgCAUCGGcuGAaUCGc -3'
miRNA:   3'- -GGUCGCuACCCGU-GUAGCCc-CUgAGU- -5'
7366 5' -57.2 NC_001900.1 + 21377 0.69 0.431892
Target:  5'- gCguGCGAUGGGUAucucgcuuccCAUUGcGGGGCUUg -3'
miRNA:   3'- -GguCGCUACCCGU----------GUAGC-CCCUGAGu -5'
7366 5' -57.2 NC_001900.1 + 21796 0.69 0.431892
Target:  5'- aCGGCGcuAUGGG-ACAagCGGGGAUUCu -3'
miRNA:   3'- gGUCGC--UACCCgUGUa-GCCCCUGAGu -5'
7366 5' -57.2 NC_001900.1 + 14112 0.74 0.186243
Target:  5'- gCCAGCGGUGGGCGCucuUUGGaGACg-- -3'
miRNA:   3'- -GGUCGCUACCCGUGu--AGCCcCUGagu -5'
7366 5' -57.2 NC_001900.1 + 39472 0.75 0.181323
Target:  5'- cUCGGCGuacauGCGCGUCGGGGGCUCc -3'
miRNA:   3'- -GGUCGCuacc-CGUGUAGCCCCUGAGu -5'
7366 5' -57.2 NC_001900.1 + 44896 1.01 0.002129
Target:  5'- uCCAGCGAUGGGCAC-UCGGGGACUCAa -3'
miRNA:   3'- -GGUCGCUACCCGUGuAGCCCCUGAGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.