miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7367 5' -56.9 NC_001900.1 + 21590 0.66 0.591388
Target:  5'- aCGGcCGGCucaAGGCCG-UGCGgcUCGGCc- -3'
miRNA:   3'- aGCC-GCUG---UCCGGCuAUGU--AGCCGaa -5'
7367 5' -56.9 NC_001900.1 + 21927 0.66 0.569449
Target:  5'- -aGGCGuCGGGgCGAUcacGCAUcCGGCg- -3'
miRNA:   3'- agCCGCuGUCCgGCUA---UGUA-GCCGaa -5'
7367 5' -56.9 NC_001900.1 + 18110 0.66 0.569449
Target:  5'- aUCGGUGGCAucucccGGCUGGUugGCGUCcuGGCa- -3'
miRNA:   3'- -AGCCGCUGU------CCGGCUA--UGUAG--CCGaa -5'
7367 5' -56.9 NC_001900.1 + 23603 0.66 0.547717
Target:  5'- cUGGCGGCucAGGCCGGUGCGaCGaccaaggaGCUg -3'
miRNA:   3'- aGCCGCUG--UCCGGCUAUGUaGC--------CGAa -5'
7367 5' -56.9 NC_001900.1 + 3033 0.66 0.547717
Target:  5'- cCGGCGACGGGuCCGccuggAgAUCGaGCg- -3'
miRNA:   3'- aGCCGCUGUCC-GGCua---UgUAGC-CGaa -5'
7367 5' -56.9 NC_001900.1 + 48245 0.67 0.526253
Target:  5'- gUCGGUGGCugucaagcGGGCCGuuuuggUAUCGGCa- -3'
miRNA:   3'- -AGCCGCUG--------UCCGGCuau---GUAGCCGaa -5'
7367 5' -56.9 NC_001900.1 + 13963 0.67 0.526253
Target:  5'- -aGGuCGccaACAGuCCGGUACGUCGGCa- -3'
miRNA:   3'- agCC-GC---UGUCcGGCUAUGUAGCCGaa -5'
7367 5' -56.9 NC_001900.1 + 14362 0.67 0.526253
Target:  5'- gUGGUGGCAGGCgGuguucGCcgGUCGGCUc -3'
miRNA:   3'- aGCCGCUGUCCGgCua---UG--UAGCCGAa -5'
7367 5' -56.9 NC_001900.1 + 141 0.67 0.515639
Target:  5'- aUCGGCuACGGGCC-AUACAggccCGGUa- -3'
miRNA:   3'- -AGCCGcUGUCCGGcUAUGUa---GCCGaa -5'
7367 5' -56.9 NC_001900.1 + 24553 0.67 0.484346
Target:  5'- cCGGC-ACAGGCCGAguuCAUCGaCg- -3'
miRNA:   3'- aGCCGcUGUCCGGCUau-GUAGCcGaa -5'
7367 5' -56.9 NC_001900.1 + 29125 0.68 0.453992
Target:  5'- uUCGGUG-CGGGCagcacUACGUUGGCUUg -3'
miRNA:   3'- -AGCCGCuGUCCGgcu--AUGUAGCCGAA- -5'
7367 5' -56.9 NC_001900.1 + 44073 0.68 0.43434
Target:  5'- cCGGCaACGGGUCGA-ACAUCgaGGCUg -3'
miRNA:   3'- aGCCGcUGUCCGGCUaUGUAG--CCGAa -5'
7367 5' -56.9 NC_001900.1 + 3921 0.7 0.35243
Target:  5'- gUCGGCGAgCuGGCCGAgACGcCGGUa- -3'
miRNA:   3'- -AGCCGCU-GuCCGGCUaUGUaGCCGaa -5'
7367 5' -56.9 NC_001900.1 + 18152 0.71 0.296691
Target:  5'- gUCGGCG-CAGucGCCGAgUGgGUCGGCUc -3'
miRNA:   3'- -AGCCGCuGUC--CGGCU-AUgUAGCCGAa -5'
7367 5' -56.9 NC_001900.1 + 5011 0.72 0.274986
Target:  5'- aCGGCGGCggGGGCCGGUAC-UCGcacaccGCUUg -3'
miRNA:   3'- aGCCGCUG--UCCGGCUAUGuAGC------CGAA- -5'
7367 5' -56.9 NC_001900.1 + 11646 0.73 0.205638
Target:  5'- aUCGGCGACacccagcccgacgAGGUCGuccACAUCGGCg- -3'
miRNA:   3'- -AGCCGCUG-------------UCCGGCua-UGUAGCCGaa -5'
7367 5' -56.9 NC_001900.1 + 14197 0.75 0.175311
Target:  5'- uUCGGCGGCacggccucuGGGCCGGUGCcUCuGGCg- -3'
miRNA:   3'- -AGCCGCUG---------UCCGGCUAUGuAG-CCGaa -5'
7367 5' -56.9 NC_001900.1 + 45038 1.05 0.001054
Target:  5'- cUCGGCGACAGGCCGAUACAUCGGCUUc -3'
miRNA:   3'- -AGCCGCUGUCCGGCUAUGUAGCCGAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.