miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
737 5' -53.1 AC_000020.1 + 29728 0.66 0.62611
Target:  5'- aGCugGGuGgUGCaUACCAcaUAgUGCCAg -3'
miRNA:   3'- -CGugCCuCgACG-AUGGUa-AUgACGGU- -5'
737 5' -53.1 AC_000020.1 + 25591 0.71 0.339163
Target:  5'- uUAUGGAGaCUGCUACCAa-ACUGCa- -3'
miRNA:   3'- cGUGCCUC-GACGAUGGUaaUGACGgu -5'
737 5' -53.1 AC_000020.1 + 17527 0.67 0.572155
Target:  5'- gGCACGGccagacgcaucccccAGCU-CUGCUAg-GCUGCCAu -3'
miRNA:   3'- -CGUGCC---------------UCGAcGAUGGUaaUGACGGU- -5'
737 5' -53.1 AC_000020.1 + 16065 0.69 0.430734
Target:  5'- aGCuuGGAGC-GCUACCGaagcuauuccuggUACUGCCc -3'
miRNA:   3'- -CGugCCUCGaCGAUGGUa------------AUGACGGu -5'
737 5' -53.1 AC_000020.1 + 15639 0.73 0.281819
Target:  5'- aGCAUGGuGuCUGCggugACCAgaGCUGCCc -3'
miRNA:   3'- -CGUGCCuC-GACGa---UGGUaaUGACGGu -5'
737 5' -53.1 AC_000020.1 + 13701 1.11 0.00048
Target:  5'- gGCACGGAGCUGCUACCAUUACUGCCAa -3'
miRNA:   3'- -CGUGCCUCGACGAUGGUAAUGACGGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.