miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
739 3' -57.8 AC_000020.1 + 16405 0.66 0.401834
Target:  5'- --uCAAGUGCCCcgUGCaCCCCgGuGGAa -3'
miRNA:   3'- aguGUUCACGGGuaGUG-GGGGgU-CCU- -5'
739 3' -57.8 AC_000020.1 + 21422 0.66 0.392425
Target:  5'- gUUugGAGcaaGCCCAaCGCgCCCUCGGGGc -3'
miRNA:   3'- -AGugUUCa--CGGGUaGUG-GGGGGUCCU- -5'
739 3' -57.8 AC_000020.1 + 24288 0.66 0.374044
Target:  5'- aCACGcc-GCCgG-CGCCUCCCAGGAc -3'
miRNA:   3'- aGUGUucaCGGgUaGUGGGGGGUCCU- -5'
739 3' -57.8 AC_000020.1 + 1258 0.67 0.365075
Target:  5'- cUCACAGGgaguagcugcUGaCCUcuuUCugCCCCCAGGu -3'
miRNA:   3'- -AGUGUUC----------AC-GGGu--AGugGGGGGUCCu -5'
739 3' -57.8 AC_000020.1 + 17278 0.67 0.33907
Target:  5'- cUACAA-UGCCC-UCGCCCCcaaggCCGGGGc -3'
miRNA:   3'- aGUGUUcACGGGuAGUGGGG-----GGUCCU- -5'
739 3' -57.8 AC_000020.1 + 24823 0.67 0.321681
Target:  5'- gCACAaacugguaGGUGCCCA-CGCCUCCUgcgcgcggcgucgAGGAu -3'
miRNA:   3'- aGUGU--------UCACGGGUaGUGGGGGG-------------UCCU- -5'
739 3' -57.8 AC_000020.1 + 19550 0.68 0.314436
Target:  5'- -gGCAcGcGUCCAUCAgCCCCaCCGGGGg -3'
miRNA:   3'- agUGUuCaCGGGUAGU-GGGG-GGUCCU- -5'
739 3' -57.8 AC_000020.1 + 2714 0.71 0.17432
Target:  5'- -gGCAauAGUGCCC-UgACCCCCCAGc- -3'
miRNA:   3'- agUGU--UCACGGGuAgUGGGGGGUCcu -5'
739 3' -57.8 AC_000020.1 + 14958 1.01 0.001076
Target:  5'- cUCACAAGUGCCC-UCACCCCCCAGGAg -3'
miRNA:   3'- -AGUGUUCACGGGuAGUGGGGGGUCCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.