Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
739 | 5' | -57.8 | AC_000020.1 | + | 13691 | 0.66 | 0.429078 |
Target: 5'- --cCCagUGGUG-GGCACGgagCUGCUACCa -3' miRNA: 3'- gcaGG--ACCGCuCCGUGUg--GACGAUGG- -5' |
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739 | 5' | -57.8 | AC_000020.1 | + | 17789 | 0.66 | 0.429078 |
Target: 5'- aGUUC-GGCcuguuGGGCGCAgCCUGCUgGCCc -3' miRNA: 3'- gCAGGaCCGc----UCCGUGU-GGACGA-UGG- -5' |
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739 | 5' | -57.8 | AC_000020.1 | + | 14250 | 0.66 | 0.400287 |
Target: 5'- uCGgCCUugacGGCGGcGGCGC-CCUuuGCUGCCc -3' miRNA: 3'- -GCaGGA----CCGCU-CCGUGuGGA--CGAUGG- -5' |
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739 | 5' | -57.8 | AC_000020.1 | + | 15335 | 0.67 | 0.38179 |
Target: 5'- gCGUCCcaucgcugUGGCuAGGaagcgcCGCACCgcaGCUGCCa -3' miRNA: 3'- -GCAGG--------ACCGcUCC------GUGUGGa--CGAUGG- -5' |
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739 | 5' | -57.8 | AC_000020.1 | + | 4827 | 0.67 | 0.372758 |
Target: 5'- gGUCCUGcGC-AGGCuCAuCCUGCUGg- -3' miRNA: 3'- gCAGGAC-CGcUCCGuGU-GGACGAUgg -5' |
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739 | 5' | -57.8 | AC_000020.1 | + | 22863 | 0.68 | 0.329817 |
Target: 5'- -uUCCUcuuCGAGGCACugCUGCcagaUGCCc -3' miRNA: 3'- gcAGGAcc-GCUCCGUGugGACG----AUGG- -5' |
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739 | 5' | -57.8 | AC_000020.1 | + | 14742 | 0.69 | 0.268228 |
Target: 5'- gCGUCCcuaccagUGGCGGGGUcgGCGCgUGCgcgcucUGCCu -3' miRNA: 3'- -GCAGG-------ACCGCUCCG--UGUGgACG------AUGG- -5' |
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739 | 5' | -57.8 | AC_000020.1 | + | 15752 | 0.71 | 0.189717 |
Target: 5'- aG-CCUGGCGGguucuGGCACGCCgGCgucuCCg -3' miRNA: 3'- gCaGGACCGCU-----CCGUGUGGaCGau--GG- -5' |
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739 | 5' | -57.8 | AC_000020.1 | + | 11284 | 0.71 | 0.188156 |
Target: 5'- gGUCCcuaaccgcacuuaaUGGCuuuuuGGCACGCCUGCccGCCa -3' miRNA: 3'- gCAGG--------------ACCGcu---CCGUGUGGACGa-UGG- -5' |
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739 | 5' | -57.8 | AC_000020.1 | + | 2990 | 0.73 | 0.135563 |
Target: 5'- ---aCUGGCGAGGCAgGCaaUGCUGCUa -3' miRNA: 3'- gcagGACCGCUCCGUgUGg-ACGAUGG- -5' |
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739 | 5' | -57.8 | AC_000020.1 | + | 11308 | 0.74 | 0.114165 |
Target: 5'- uGcCCgUGGCGAuGCGCACUUGCUGCg -3' miRNA: 3'- gCaGG-ACCGCUcCGUGUGGACGAUGg -5' |
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739 | 5' | -57.8 | AC_000020.1 | + | 14993 | 1.11 | 0.000201 |
Target: 5'- gCGUCCUGGCGAGGCACACCUGCUACCc -3' miRNA: 3'- -GCAGGACCGCUCCGUGUGGACGAUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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