miRNA display CGI


Results 1 - 12 of 12 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
739 5' -57.8 AC_000020.1 + 13691 0.66 0.429078
Target:  5'- --cCCagUGGUG-GGCACGgagCUGCUACCa -3'
miRNA:   3'- gcaGG--ACCGCuCCGUGUg--GACGAUGG- -5'
739 5' -57.8 AC_000020.1 + 17789 0.66 0.429078
Target:  5'- aGUUC-GGCcuguuGGGCGCAgCCUGCUgGCCc -3'
miRNA:   3'- gCAGGaCCGc----UCCGUGU-GGACGA-UGG- -5'
739 5' -57.8 AC_000020.1 + 14250 0.66 0.400287
Target:  5'- uCGgCCUugacGGCGGcGGCGC-CCUuuGCUGCCc -3'
miRNA:   3'- -GCaGGA----CCGCU-CCGUGuGGA--CGAUGG- -5'
739 5' -57.8 AC_000020.1 + 15335 0.67 0.38179
Target:  5'- gCGUCCcaucgcugUGGCuAGGaagcgcCGCACCgcaGCUGCCa -3'
miRNA:   3'- -GCAGG--------ACCGcUCC------GUGUGGa--CGAUGG- -5'
739 5' -57.8 AC_000020.1 + 4827 0.67 0.372758
Target:  5'- gGUCCUGcGC-AGGCuCAuCCUGCUGg- -3'
miRNA:   3'- gCAGGAC-CGcUCCGuGU-GGACGAUgg -5'
739 5' -57.8 AC_000020.1 + 22863 0.68 0.329817
Target:  5'- -uUCCUcuuCGAGGCACugCUGCcagaUGCCc -3'
miRNA:   3'- gcAGGAcc-GCUCCGUGugGACG----AUGG- -5'
739 5' -57.8 AC_000020.1 + 14742 0.69 0.268228
Target:  5'- gCGUCCcuaccagUGGCGGGGUcgGCGCgUGCgcgcucUGCCu -3'
miRNA:   3'- -GCAGG-------ACCGCUCCG--UGUGgACG------AUGG- -5'
739 5' -57.8 AC_000020.1 + 15752 0.71 0.189717
Target:  5'- aG-CCUGGCGGguucuGGCACGCCgGCgucuCCg -3'
miRNA:   3'- gCaGGACCGCU-----CCGUGUGGaCGau--GG- -5'
739 5' -57.8 AC_000020.1 + 11284 0.71 0.188156
Target:  5'- gGUCCcuaaccgcacuuaaUGGCuuuuuGGCACGCCUGCccGCCa -3'
miRNA:   3'- gCAGG--------------ACCGcu---CCGUGUGGACGa-UGG- -5'
739 5' -57.8 AC_000020.1 + 2990 0.73 0.135563
Target:  5'- ---aCUGGCGAGGCAgGCaaUGCUGCUa -3'
miRNA:   3'- gcagGACCGCUCCGUgUGg-ACGAUGG- -5'
739 5' -57.8 AC_000020.1 + 11308 0.74 0.114165
Target:  5'- uGcCCgUGGCGAuGCGCACUUGCUGCg -3'
miRNA:   3'- gCaGG-ACCGCUcCGUGUGGACGAUGg -5'
739 5' -57.8 AC_000020.1 + 14993 1.11 0.000201
Target:  5'- gCGUCCUGGCGAGGCACACCUGCUACCc -3'
miRNA:   3'- -GCAGGACCGCUCCGUGUGGACGAUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.