miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
740 3' -54.4 AC_000020.1 + 15568 1.08 0.000513
Target:  5'- cCAAGCCUACAGGCAAGAUCAGCCGCUg -3'
miRNA:   3'- -GUUCGGAUGUCCGUUCUAGUCGGCGA- -5'
740 3' -54.4 AC_000020.1 + 1184 0.67 0.483084
Target:  5'- cCAAaCCUGgGGGCAgaaagAGGUCAGCaGCUa -3'
miRNA:   3'- -GUUcGGAUgUCCGU-----UCUAGUCGgCGA- -5'
740 3' -54.4 AC_000020.1 + 15512 0.68 0.430164
Target:  5'- aCGAGCCaaacGCGGGCccAGcgCGGUCGCg -3'
miRNA:   3'- -GUUCGGa---UGUCCGu-UCuaGUCGGCGa -5'
740 3' -54.4 AC_000020.1 + 17334 0.69 0.390371
Target:  5'- -cGGCCUugGgGGCGAGggCAuuguaggcgguGCCGCUg -3'
miRNA:   3'- guUCGGAugU-CCGUUCuaGU-----------CGGCGA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.